Factsheet for Solyc11g069800.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
vacuole 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g047770.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42650.1	Solyc07g047770.2.1	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400002934	Potato	plastid	89.02	89.02
KRH15274	Soybean	cytosol	57.25	69.86
KRH05758	Soybean	nucleus, plastid	66.47	65.32
Solyc04g079730.1.1	Tomato	plastid	68.24	65.17
VIT_18s0001g11630.t01	Wine grape	plastid	65.29	64.04
KRH61218	Soybean	nucleus, plastid	65.29	63.92
AT5G42650.1	Thale cress	plastid	61.96	61.0
CDY02409	Canola	plastid	59.02	56.9
CDY23912	Canola	plastid	59.02	56.9
GSMUA_Achr4P32370_001	Banana	plastid	55.29	56.85
Bra035320.1-P	Field mustard	plastid	58.63	56.52
Zm00001d013185_P001	Maize	plastid	55.29	55.19
EER90827	Sorghum	plastid	55.29	55.08
Zm00001d034184_P001	Maize	plasma membrane, plastid	54.9	54.26
GSMUA_Achr8P02880_001	Banana	plastid	54.12	54.22
Zm00001d034186_P001	Maize	plastid	54.31	53.37
Os03t0767000-01	Rice	plastid	53.53	53.32
TraesCS5D01G413200.1	Wheat	plastid	51.96	52.17
HORVU5Hr1G098090.1	Barley	plastid	51.76	51.97
TraesCS5A01G403200.1	Wheat	plastid	51.76	51.97
TraesCS5B01G408000.1	Wheat	plastid	51.96	51.66
Solyc01g109150.2.1	Tomato	cytosol	48.82	50.4
Solyc01g109160.2.1	Tomato	cytosol	47.45	49.59
Solyc10g007960.1.1	Tomato	cytosol	46.86	48.68
TraesCS6D01G172200.1	Wheat	cytosol, plastid	44.12	45.82
HORVU6Hr1G039440.1	Barley	plasma membrane	43.53	45.21
Solyc01g109140.2.1	Tomato	nucleus	41.57	44.35
Os02t0218700-01	Rice	extracellular, plasma membrane	43.14	44.0
Os02t0218800-01	Rice	cytosol, plasma membrane, plastid, vacuole	43.73	43.73
TraesCS6B01G213300.1	Wheat	plastid	43.92	42.99
TraesCS6A01G185100.1	Wheat	mitochondrion, plastid	44.51	42.91
Zm00001d053586_P001	Maize	cytosol	41.57	41.65
EES04752	Sorghum	cytosol	42.75	41.52
Solyc07g049690.2.1	Tomato	plastid	35.1	37.6
KRH38153	Soybean	plastid	8.82	35.16
GSMUA_Achr2P13300_001	Banana	cytosol	52.55	21.2

Protein Annotations

Gene3D:1.10.630.10	MapMan:11.7.1.3	EMBL:AF230371	InterPro:Cyt_P450	InterPro:Cyt_P450_E_grp-IV	InterPro:Cyt_P450_sf
GO:GO:0003674	GO:GO:0003824	GO:GO:0004497	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0006631	GO:GO:0006633
GO:GO:0006950	GO:GO:0006952	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009528	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009695	GO:GO:0009706
GO:GO:0009941	GO:GO:0009987	GO:GO:0016020	GO:GO:0016125	GO:GO:0016705	GO:GO:0016829
GO:GO:0020037	GO:GO:0031408	GO:GO:0046872	GO:GO:0047987	GO:GO:0055114	InterPro:IPR036396
PFAM:PF00067	PRINTS:PR00465	PANTHER:PTHR24286	PANTHER:PTHR24286:SF50	UniProt:Q9LLB0	SUPFAM:SSF48264
EnsemblPlantsGene:Solyc11g069800.1	EnsemblPlants:Solyc11g069800.1.1	UniParc:UPI000004B688	SEG:seg	:	:

Description

AOS2Allene oxide synthase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LLB0]

Coordinates

chr11:-:54429028..54430560

Molecular Weight (calculated)

57206.3 Da

IEP (calculated)

9.041

GRAVY (calculated)

-0.141

Length

510 amino acids

Sequence
(BLAST)

001: MALTLSFSLP LPSLHQKIPS KYSTFRPIIV SLSDKSTIEI TQPIKLSTRT IPGDYGLPGI GPWKDRLDYF YNQGKNDFFE SRIAKYKSTI FRTNMPPGPF
101: ITSNPKVIVL LDGKSFPVLF DASKVEKKDL FTGTFVPSTE LTGGYRILSY LDPSEPNHEK LKKLMFFLLS SRRDHVIPEF HETYTELFET LDKEMEEKGT
201: VGFNSGSDQA AFNFLARSLF GVNPVETKLG TDGPALIGKW ILLQLHPVIT LGLPKFLDDV LLHTFRLPPI LVKKDYQRLY DFFYTNSANL FIEAEKLGIS
301: KDEACHNLLF ATCFNSFGGM KIFFPNMLKS IAKAGVEIHT RLANEIRSEV KSAGGKITMS AMEKMPLMKS VVYEALRVDP PVASQYGRAK QDLKIESHDA
401: VFEVKKGEIL FGYQPFATKD PKIFDRPGEF VADRFVGEEG EKLLKHVLWS NGPETESPTV GNKQCAGKDF VVMVSRLFVT EFFLRYGTLN VDVGTSALGS
501: SITITSLKKA

Best Arabidopsis Sequence Match ( AT5G42650.1 )
(BLAST)

001: MASISTPFPI SLHPKTVRSK PLKFRVLTRP IKASGSETPD LTVATRTGSK DLPIRNIPGN YGLPIVGPIK DRWDYFYDQG AEEFFKSRIR KYNSTVYRVN
101: MPPGAFIAEN PQVVALLDGK SFPVLFDVDK VEKKDLFTGT YMPSTELTGG YRILSYLDPS EPKHEKLKNL LFFLLKSSRN RIFPEFQATY SELFDSLEKE
201: LSLKGKADFG GSSDGTAFNF LARAFYGTNP ADTKLKADAP GLITKWVLFN LHPLLSIGLP RVIEEPLIHT FSLPPALVKS DYQRLYEFFL ESAGEILVEA
301: DKLGISREEA THNLLFATCF NTWGGMKILF PNMVKRIGRA GHQVHNRLAE EIRSVIKSNG GELTMGAIEK MELTKSVVYE CLRFEPPVTA QYGRAKKDLV
401: IESHDAAFKV KAGEMLYGYQ PLATRDPKIF DRADEFVPER FVGEEGEKLL RHVLWSNGPE TETPTVGNKQ CAGKDFVVLV ARLFVIEIFR RYDSFDIEVG
501: TSPLGSSVNF SSLRKASF

Arabidopsis Description

CYP74AAllene oxide synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q96242]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.