Factsheet for TraesCS6D01G031100.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 18071923

msms PMID: 18071923 doi

LA Blomqvist, M Ryberg, C Sundqvist

Department of Plant and Environmental Sciences, Göteborg University, P.O. Box 461, 405 30 Göteborg, Sweden.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G039500.1	Wheat	plastid	96.26	96.26
TraesCS6A01G027900.1	Wheat	plastid	95.84	95.25
HORVU6Hr1G005250.1	Barley	plastid	90.23	79.34
Os02t0110200-01	Rice	plastid	74.01	73.1
OQU84187	Sorghum	plastid	69.85	66.8
Zm00001d054067_P001	Maize	plasma membrane	69.02	66.14
GSMUA_Achr6P13520_001	Banana	plastid	57.38	59.74
KRH26745	Soybean	plastid	49.48	50.21
AT4G15440.1	Thale cress	cytosol	39.09	48.96
CDX90591	Canola	plastid	48.02	47.24
VIT_12s0059g01060.t01	Wine grape	plastid	47.82	47.23
CDY09763	Canola	cytosol, plastid	37.63	47.14
Solyc07g049690.2.1	Tomato	plastid	46.15	46.64
Bra012788.1-P	Field mustard	plastid	47.19	46.42
PGSC0003DMT400002779	Potato	plastid	45.53	45.62
TraesCS6D01G172200.1	Wheat	cytosol, plastid	40.33	39.51
TraesCS5D01G413200.1	Wheat	plastid	41.37	39.17
TraesCS4D01G238800.1	Wheat	cytosol, golgi	38.46	38.38
TraesCS4D01G238700.1	Wheat	plastid	37.42	37.5

Protein Annotations

Gene3D:1.10.630.10	MapMan:35.1	InterPro:Cyt_P450	InterPro:Cyt_P450_sf	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005506	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009536	GO:GO:0009611	GO:GO:0009941
GO:GO:0016705	GO:GO:0020037	GO:GO:0055114	InterPro:IPR036396	PFAM:PF00067	PANTHER:PTHR24286
PANTHER:PTHR24286:SF49	SUPFAM:SSF48264	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS6D01G031100	EnsemblPlants:TraesCS6D01G031100.2	SEG:seg

Description

No Description!

Coordinates

chr6D:+:13060151..13061596

Molecular Weight (calculated)

52905.6 Da

IEP (calculated)

5.779

GRAVY (calculated)

0.006

Length

481 amino acids

Sequence
(BLAST)

001: MLPSFSPAAT AVATPPPKPI PGGYGAPVLG PLRDRLDYFW FQGPEEFFRR RAAQYRSTVF RANIPPTFPF FVGVNPRVVA IVDTAAFTAL FDPELVDKRD
101: CLIGPYNPSD SFTGGTRVGV YLDTEEPEHE RTKAFAMDLL RRSSRVWAPE FLEGVDGMLA AIESDLAAGK EGGASFLVPL QKCIFRFLCR AVASADPAAE
201: DLVDRYGLFI LDVWLGLQLV PTQKIGAIPQ PLEELLLHSF PFPSILVKPG YDLLYRFVEK HGAASVAVGV KDHGMSDKDA INNILFLLGF NAFGGFSVFL
301: PFLILQAGKD AALRAKLRDE VRAALERHAG EVGFASVRAM PLVRSTVYEV LRMNPPVPLQ FGRARRDFVL RSHGGEGFSV AAGEMLCGYQ PLAMRDPAVF
401: DRPDEFVADR FVGAEGEALL RYVYWSNGPE TGEPTKGNKQ CAAKDVVVAT ACMLVAELFR RYDDFECDGT SFTSLQKRQP S

Best Arabidopsis Sequence Match ( AT4G15440.1 )
(BLAST)

001: MDLVDKRDVL IGDFRPSLGF YGGVRVGVYL DTTEPKHAKI KGFAMETLKR SSKVWLQELR SNLNIFWGTI ESEISKNGAA SYIFPLQRCI FSFLCASLAG
101: VDASVSPDIA ENGWKTINTW LALQVIPTAK LGVVPQPLEE ILLHTWPYPS LLIAGNYKKL YNFIDENAGD CLRLGQEEFG LTRDEAIQNL LFVLGFNAYG
201: GFSVFLPSLI GRITGDNSGL QERIRTEVRR VCGSGSDLNF KTVNEMELVK SVVYETLRFS PPVPLQFARA RKDFQISSHD AVFEVKKGEL LCGYQPLVMR
301: DANVFDEPEE FKPDRYVGET GSELLNYLYW SNGPQTGTPS ASNKQCAAKD IVTLTASLLV ADLFLRYDTI TGDSGSIKAV VKAK

Arabidopsis Description

CYP74B2Probable inactive linolenate hydroperoxide lyase [Source:UniProtKB/Swiss-Prot;Acc:B3LF83]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.