Factsheet for GSMUA_Achr6P13520_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0110200-01	Rice	plastid	62.12	58.93
TraesCS6D01G031100.2	Wheat	plastid	59.74	57.38
TraesCS6A01G027900.1	Wheat	plastid	58.87	56.2
TraesCS6B01G039500.1	Wheat	plastid	58.23	55.93
Solyc07g049690.2.1	Tomato	plastid	57.14	55.46
Zm00001d054067_P001	Maize	plasma membrane	59.74	54.98
OQU84187	Sorghum	plastid	59.74	54.87
PGSC0003DMT400002779	Potato	plastid	55.63	53.54
VIT_12s0059g01060.t01	Wine grape	plastid	56.06	53.18
CDX90591	Canola	plastid	55.63	52.56
Bra012788.1-P	Field mustard	plastid	54.98	51.94
KRH26745	Soybean	plastid	53.25	51.9
CDY09763	Canola	cytosol, plastid	42.86	51.56
AT4G15440.1	Thale cress	cytosol	42.86	51.56
HORVU6Hr1G005250.1	Barley	plastid	58.23	49.18
GSMUA_Achr8P04830_001	Banana	cytosol	39.18	42.79
GSMUA_Achr8P02880_001	Banana	plastid	43.07	39.1
GSMUA_Achr4P32370_001	Banana	plastid	41.34	38.51
GSMUA_Achr5P08810_001	Banana	cytosol	40.69	21.63
GSMUA_Achr2P13300_001	Banana	cytosol	41.34	15.11

Protein Annotations

Gene3D:1.10.630.10	MapMan:35.1	InterPro:Cyt_P450	InterPro:Cyt_P450_E_grp-IV	InterPro:Cyt_P450_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0004497	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009536	GO:GO:0009611	GO:GO:0009941	GO:GO:0009987	GO:GO:0010597	GO:GO:0016705
GO:GO:0016829	GO:GO:0020037	GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr6G13520_001	EnsemblPlants:GSMUA_Achr6P13520_001
EnsemblPlants:GSMUA_Achr6T13520_001	InterPro:IPR036396	UniProt:M0T6Q0	PFAM:PF00067	PRINTS:PR00465	PANTHER:PTHR24286
PANTHER:PTHR24286:SF49	SUPFAM:SSF48264	UniParc:UPI000295E3A4	SEG:seg	:	:

Description

Putative Allene oxide synthase, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr6G13520_001]

Coordinates

chr6:+:8988356..8990051

Molecular Weight (calculated)

51663.5 Da

IEP (calculated)

6.027

GRAVY (calculated)

-0.034

Length

462 amino acids

Sequence
(BLAST)

001: MAMMWSSASA TAVTTLPTRP IPGSYGPPLV GPLKDRLDYF WFQGPETFFR SRMATHKSTV FRTNMPPTFP FFVGVDPRVV TVLDCTSFSA LFDLEVVEKK
101: NILIGDYMPS LSFTGDTRVV VYLDPSEPDH ARVKSFCLEL LRRGAKTWVS SFLSNLDVML ATIEQGIAKD GSAGLFGPLQ KCIFAFLCKS IIGADPSVSP
201: DVGENGFVML DKWLALQLLP TVKVGAIPQP LEEILLHSFP LPFFLRAETE HGLSKHDAIN NILFVLGFNA FGGFSVFFPT LLTTIGRDKT GLREKLKDEV
301: RRVMKSRGEK RPSFETVREM ELVRSTVYEV LRLNPPVPLQ YGRARTDFTL NSHDAAFKVE KGELLCGYQP LVMRDPAVFD DPETFAPERF MGSGKELLKY
401: VFWSNGPETG TPTPANKQCA AKDYVVETAC LLMAEIFYRY DEFVCADDAI SVTKLDRATE RE

Best Arabidopsis Sequence Match ( AT4G15440.1 )
(BLAST)

001: MDLVDKRDVL IGDFRPSLGF YGGVRVGVYL DTTEPKHAKI KGFAMETLKR SSKVWLQELR SNLNIFWGTI ESEISKNGAA SYIFPLQRCI FSFLCASLAG
101: VDASVSPDIA ENGWKTINTW LALQVIPTAK LGVVPQPLEE ILLHTWPYPS LLIAGNYKKL YNFIDENAGD CLRLGQEEFG LTRDEAIQNL LFVLGFNAYG
201: GFSVFLPSLI GRITGDNSGL QERIRTEVRR VCGSGSDLNF KTVNEMELVK SVVYETLRFS PPVPLQFARA RKDFQISSHD AVFEVKKGEL LCGYQPLVMR
301: DANVFDEPEE FKPDRYVGET GSELLNYLYW SNGPQTGTPS ASNKQCAAKD IVTLTASLLV ADLFLRYDTI TGDSGSIKAV VKAK

Arabidopsis Description

CYP74B2Probable inactive linolenate hydroperoxide lyase [Source:UniProtKB/Swiss-Prot;Acc:B3LF83]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.