CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, nucleus

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 9
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	vacuole

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23303	Soybean	nucleus	95.3	95.47
KRH47104	Soybean	nucleus	78.61	80.14
KRH44130	Soybean	vacuole	78.09	79.61
KRH44129	Soybean	vacuole	68.35	76.46
VIT_09s0002g02320.t01	Wine grape	vacuole	65.22	65.56
AT3G13790.1	Thale cress	vacuole	63.65	62.67
Bra021508.1-P	Field mustard	vacuole	62.09	61.66
CDY37487	Canola	vacuole	62.61	61.64
CDY51739	Canola	vacuole	62.61	61.54
Bra027397.1-P	Field mustard	vacuole	61.74	61.21
CDX97519	Canola	vacuole	62.09	61.13
CDY23643	Canola	vacuole	53.91	58.49
Bra027398.1-P	Field mustard	cytosol	49.91	58.22
CDY33067	Canola	vacuole	58.43	58.03
CDX97518	Canola	endoplasmic reticulum, vacuole	57.39	57.69
Bra037980.1-P	Field mustard	vacuole	57.39	57.39
CDY23644	Canola	vacuole	60.35	57.36
CDY24053	Canola	vacuole	57.74	57.34
AT1G55120.1	Thale cress	vacuole	58.96	57.07
PGSC0003DMT400006639	Potato	vacuole	56.17	56.57
AT3G13784.2	Thale cress	vacuole	56.17	56.47
PGSC0003DMT400083254	Potato	nucleus, peroxisome, vacuole	49.39	56.02
Solyc03g121680.1.1	Tomato	vacuole	55.13	55.52
KRH32774	Soybean	endoplasmic reticulum, vacuole	55.48	55.38
KRG89527	Soybean	vacuole	52.7	54.59
KRH67945	Soybean	vacuole	50.61	54.49
Solyc06g064620.2.1	Tomato	mitochondrion	52.87	54.29
KRG89524	Soybean	cytosol	39.48	54.05
KRH15569	Soybean	vacuole	53.22	53.12
KRG96203	Soybean	vacuole	50.78	52.71
KRG89530	Soybean	vacuole	42.26	52.48
KRH05439	Soybean	cytosol	50.96	52.14
KRH05441	Soybean	cytosol	49.39	51.45
KRG89522	Soybean	cytosol, nucleus, vacuole	27.13	49.84
KRH15559	Soybean	cytosol	28.87	47.03
KRH57351	Soybean	endoplasmic reticulum	45.57	40.62
KRH15564	Soybean	mitochondrion	15.48	40.27
KRH04082	Soybean	endoplasmic reticulum	45.04	40.16
KRH23803	Soybean	vacuole	42.43	39.74
KRH39981	Soybean	vacuole	43.48	39.68
KRH28036	Soybean	vacuole	42.61	39.58
KRH77397	Soybean	endoplasmic reticulum	46.09	39.26
KRH56348	Soybean	vacuole	43.83	39.01
KRH08807	Soybean	cytosol, nucleus, vacuole	13.91	37.56

Protein Annotations

KEGG:00052+3.2.1.26	KEGG:00500+3.2.1.26	EntrezGene:100776791	Gene3D:2.115.10.20	Gene3D:2.60.120.560	MapMan:3.1.4.1.1
EMBL:ACUP02009116	InterPro:ConA-like_dom_sf	EnsemblPlantsGene:GLYMA_15G024600	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	InterPro:Glyco_hydro_32
InterPro:Glyco_hydro_32_AS	InterPro:Glyco_hydro_32_C	InterPro:Glyco_hydro_32_N	InterPro:Glyco_hydro_beta-prop_sf	UniProt:I1MCZ9	InterPro:IPR023296
EnsemblPlants:KRH10019	ProteinID:KRH10019	ProteinID:KRH10019.1	PFAM:PF00251	PFAM:PF08244	ScanProsite:PS00609
PANTHER:PTHR31953	PANTHER:PTHR31953:SF16	SMART:SM00640	SUPFAM:SSF49899	SUPFAM:SSF75005	SignalP:SignalP-noTM
UniParc:UPI000233B759	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:+:1992572..1996208

Molecular Weight (calculated)

64372.8 Da

IEP (calculated)

8.891

GRAVY (calculated)

-0.300

Length

575 amino acids

Sequence
(BLAST)

001: MAVSPILLLL AIFSLIYGNG ILPIEATHHV YRNLQTLSSD SSDQPYRTAY HFQPPKNWIN DPNGPMRYKG LYHLFYQYNP KGAVWGNIVW AHSVSKDLVN
101: WTPLDHAIYP SQPSDINGCW SGSATILPGG KPAILYTGID PNNHQVQNLA LPKNMSDPLL REWVKSPKNP LMAPTSANMI NSSSFRDPTT AWLGKDGYWR
201: VLIGSKIHTR GMAILYKSKN FVNWVQAKQP LHSAEGTGMW ECPDFYPVLN NKPSSTIGLD TSVNGDNVRH VLKVSLDDKK HDHYLIGTYD IAKDIFTPDN
301: GFEDSQTVLR YDYGKYYASK TIFEDGKNRR VLLGWVNESS SVSDDIKKGW AGIHTIPRAI WLHKSGKQLV QWPVVELESL RVNPVHWPTK VVKGGEMLQV
401: TGVTAAQADV EISFDVNEFG KGEVLDQWVD PQILCSRKGA AVKGGLGPFG LLVFASRGLQ EYTAVFFRIF RYQNKNLVLM CSDQSRSSLN KDNDMTTYGT
501: FVDMDPLHEK LSLRTLIDHS VVESFGGEGR ACITARVYPT IAINEKAQLY AFNNGTAAVK ITRLSAWSME KAKIN

Best Arabidopsis Sequence Match ( AT3G13790.1 )
(BLAST)

001: MTKEVCSNIG LWLLLTLLIG NYVVNLEASH HVYKRLTQST NTKSPSVNQP YRTGFHFQPP KNWMNDPNGP MIYKGIYHLF YQWNPKGAVW GNIVWAHSTS
101: TDLINWDPHP PAIFPSAPFD INGCWSGSAT ILPNGKPVIL YTGIDPKNQQ VQNIAEPKNL SDPYLREWKK SPLNPLMAPD AVNGINASSF RDPTTAWLGQ
201: DKKWRVIIGS KIHRRGLAIT YTSKDFLKWE KSPEPLHYDD GSGMWECPDF FPVTRFGSNG VETSSFGEPN EILKHVLKIS LDDTKHDYYT IGTYDRVKDK
301: FVPDNGFKMD GTAPRYDYGK YYASKTFFDS AKNRRILWGW TNESSSVEDD VEKGWSGIQT IPRKIWLDRS GKQLIQWPVR EVERLRTKQV KNLRNKVLKS
401: GSRLEVYGVT AAQADVEVLF KVRDLEKADV IEPSWTDPQL ICSKMNVSVK SGLGPFGLMV LASKNLEEYT SVYFRIFKAR QNSNKYVVLM CSDQSRSSLK
501: EDNDKTTYGA FVDINPHQPL SLRALIDHSV VESFGGKGRA CITSRVYPKL AIGKSSHLFA FNYGYQSVDV LNLNAWSMNS AQIS

Arabidopsis Description

CWINV1Beta-fructofuranosidase, insoluble isoenzyme CWINV1 [Source:UniProtKB/Swiss-Prot;Acc:Q43866]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.