CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
vacuole 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 23041469

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11076
KRH21197
KRH42923
KRH42926
KRH45251
KRH59035
KRH59036

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12240.1	KRH11076	AT4G19030.1	21798944
AT1G12240.1	KRH21197	AT4G19030.1	21798944
AT1G12240.1	KRH42923	AT4G19030.1	21798944
AT1G12240.1	KRH42926	AT4G19030.1	21798944
AT1G12240.1	KRH45251	AT4G19030.1	21798944
AT1G12240.1	KRH59035	AT4G19030.1	21798944
AT1G12240.1	KRH59036	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04082	Soybean	endoplasmic reticulum	95.19	95.19
KRH77397	Soybean	endoplasmic reticulum	77.21	73.78
KRH28036	Soybean	vacuole	69.77	72.7
VIT_02s0154g00090.t01	Wine grape	vacuole	57.98	71.37
GSMUA_Achr11P...	Banana	mitochondrion, vacuole	52.56	63.84
AT1G62660.1	Thale cress	vacuole	64.03	63.73
GSMUA_Achr5P19880_001	Banana	mitochondrion, vacuole	55.35	63.52
CDY30056	Canola	vacuole	64.81	63.43
AT1G12240.1	Thale cress	vacuole	65.12	63.25
CDY39804	Canola	vacuole	61.86	63.23
CDY26548	Canola	vacuole	64.5	62.75
CDY03265	Canola	vacuole	61.24	62.6
HORVU2Hr1G091990.6	Barley	cytosol	23.72	62.45
CDY31826	Canola	vacuole	63.26	62.39
CDX98080	Canola	cytosol, peroxisome, vacuole	63.72	62.08
Bra027030.1-P	Field mustard	vacuole	62.95	62.08
CDY46906	Canola	vacuole	62.95	62.08
GSMUA_Achr1P11470_001	Banana	peroxisome, plastid, vacuole	53.18	61.91
Bra019749.1-P	Field mustard	nucleus, peroxisome, vacuole	63.41	61.78
Bra036653.1-P	Field mustard	vacuole	62.33	61.37
PGSC0003DMT400012217	Potato	cytosol, peroxisome, plastid, vacuole	62.02	61.26
Solyc08g079080.2.1	Tomato	unclear	61.86	61.2
CDY03264	Canola	cytosol, golgi, vacuole	57.36	61.06
Bra036652.1-P	Field mustard	cytosol, golgi, plastid, vacuole	56.43	60.87
CDY39805	Canola	cytosol, golgi, plastid, vacuole	56.74	60.4
CDY15984	Canola	vacuole	63.57	60.29
Bra026984.1-P	Field mustard	vacuole	64.5	60.29
KRH23803	Soybean	vacuole	56.43	59.28
KRH39981	Soybean	vacuole	57.83	59.21
Os04t0535600-01	Rice	extracellular, mitochondrion, plasma membrane	59.07	58.08
TraesCS2A01G386100.2	Wheat	plastid, vacuole	58.76	57.77
TraesCS2B01G403000.1	Wheat	vacuole	58.91	57.66
TraesCS2D01G382600.2	Wheat	vacuole	58.76	57.16
KRH56348	Soybean	vacuole	56.59	56.5
Zm00001d025943_P001	Maize	vacuole	57.98	55.9
Os02t0106100-01	Rice	plasma membrane	56.74	55.29
TraesCS7A01G010200.1	Wheat	endoplasmic reticulum, peroxisome, vacuole	55.97	54.95
Zm00001d002830_P001	Maize	extracellular	56.74	54.87
TraesCS4A01G484800.1	Wheat	endoplasmic reticulum, peroxisome, vacuole	55.81	54.71
TraesCS7D01G010000.2	Wheat	endoplasmic reticulum, peroxisome, vacuole	55.66	54.56
Zm00001d014947_P001	Maize	plasma membrane	56.9	54.53
Zm00001d054075_P001	Maize	plastid, vacuole	46.2	54.38
OQU84152	Sorghum	endoplasmic reticulum, peroxisome, plastid, vacuole	56.59	54.15
HORVU7Hr1G001070.1	Barley	cytosol, peroxisome, vacuole	54.88	53.64
TraesCS4A01G485500.1	Wheat	mitochondrion	42.17	53.44
TraesCS7D01G009300.1	Wheat	mitochondrion	42.17	53.44
TraesCS6A01G023100.1	Wheat	vacuole	55.5	53.12
TraesCS6D01G026300.2	Wheat	peroxisome, plastid, vacuole	55.5	52.96
TraesCS6D01G026600.2	Wheat	endoplasmic reticulum, peroxisome, vacuole	54.73	52.61
HORVU6Hr1G004000.2	Barley	endoplasmic reticulum, peroxisome, vacuole	53.64	52.42
TraesCS6B01G031700.1	Wheat	endoplasmic reticulum, peroxisome, vacuole	54.42	52.15
TraesCS6B01G031500.1	Wheat	extracellular, peroxisome, vacuole	54.57	52.07
TraesCS6A01G023300.2	Wheat	peroxisome, plastid, vacuole	54.11	51.86
TraesCS6B01G031300.1	Wheat	peroxisome, plastid, vacuole	54.11	51.86
TraesCS6A01G023200.1	Wheat	peroxisome, plastid, vacuole	53.8	51.79
TraesCS6D01G026400.1	Wheat	peroxisome, plastid, vacuole	53.95	51.79
TraesCS6D01G026500.2	Wheat	peroxisome, plastid, vacuole	54.26	51.62
TraesCS6B01G031600.1	Wheat	peroxisome, plastid, vacuole	53.33	51.57
HORVU6Hr1G004010.8	Barley	peroxisome, plastid, vacuole	54.26	51.55
TraesCS4A01G485400.2	Wheat	golgi	48.84	51.14
TraesCS4A01G485000.2	Wheat	endoplasmic reticulum, peroxisome, vacuole	48.22	50.73
TraesCS7A01G009800.2	Wheat	golgi, unclear	48.53	50.48
TraesCS4A01G485800.1	Wheat	vacuole	50.7	50.46
TraesCS7D01G009400.2	Wheat	cytosol, plastid, vacuole	48.53	50.4
TraesCS7D01G008900.1	Wheat	vacuole	50.54	50.31
HORVU7Hr1G000270.1	Barley	mitochondrion	49.77	50.23
TraesCS7A01G009400.1	Wheat	vacuole	50.23	49.92
TraesCS7A01G009700.1	Wheat	mitochondrion, plastid	47.13	49.92
OQU82023	Sorghum	plastid	53.8	49.29
TraesCS7A01G009100.1	Wheat	endoplasmic reticulum, peroxisome, vacuole	49.77	48.56
TraesCS7D01G008700.1	Wheat	vacuole	49.77	48.49
TraesCS4A01G485900.1	Wheat	cytosol, peroxisome, vacuole	48.68	48.46
TraesCS7A01G009200.2	Wheat	vacuole	48.68	48.46
TraesCS7D01G008800.2	Wheat	cytosol, plastid, vacuole	48.37	48.45
HORVU0Hr1G018850.4	Barley	vacuole	46.05	48.37
TraesCS7D01G009700.1	Wheat	endoplasmic reticulum, peroxisome, vacuole	48.06	48.21
TraesCS4A01G486000.1	Wheat	golgi	49.61	48.19
TraesCS7A01G060400.1	Wheat	cytosol, peroxisome, plastid, vacuole	47.91	48.06
TraesCS7D01G055000.1	Wheat	plastid	47.75	47.9
TraesCS4A01G485600.1	Wheat	mitochondrion, vacuole	48.22	47.85
HORVU7Hr1G000250.3	Barley	vacuole	48.53	47.64
TraesCS7A01G009600.3	Wheat	mitochondrion	48.06	47.55
HORVU7Hr1G001040.6	Barley	plastid	48.68	47.08
TraesCS7A01G009500.3	Wheat	plastid	45.89	45.75
KRH23303	Soybean	nucleus	40.62	45.64
KRH10019	Soybean	nucleus, vacuole	40.62	45.57
KRH32774	Soybean	endoplasmic reticulum, vacuole	40.31	45.14
TraesCS4A01G485700.1	Wheat	cytosol, mitochondrion, peroxisome, plastid, vacuole	46.67	45.13
KRG89527	Soybean	vacuole	38.45	44.68
HORVU7Hr1G000260.1	Barley	plastid	50.08	44.61
TraesCS7D01G054800.3	Wheat	mitochondrion, vacuole	48.37	44.51
TraesCS7D01G009100.1	Wheat	cytosol, mitochondrion, peroxisome, vacuole	46.05	44.39
KRH67945	Soybean	vacuole	36.74	44.38
KRH47104	Soybean	nucleus	38.76	44.33
TraesCS7A01G060300.2	Wheat	mitochondrion	48.06	44.16
KRH44129	Soybean	vacuole	34.73	43.58
KRH44130	Soybean	vacuole	37.98	43.44
KRG89524	Soybean	cytosol	28.22	43.33
KRH15569	Soybean	vacuole	38.29	42.88
KRH05441	Soybean	cytosol	36.59	42.75
KRG89530	Soybean	vacuole	30.39	42.33
HORVU0Hr1G018840.1	Barley	cytosol, plastid, vacuole	16.9	42.08
KRG96203	Soybean	vacuole	35.97	41.88
TraesCS7D01G009200.2	Wheat	cytosol, mitochondrion, plasma membrane, plastid, vacuole	48.68	41.53
KRH05439	Soybean	cytosol	35.97	41.28
KRG89522	Soybean	cytosol, nucleus, vacuole	19.07	39.3
KRH15559	Soybean	cytosol	20.78	37.96
KRH08807	Soybean	cytosol, nucleus, vacuole	10.7	32.39
KRH15564	Soybean	mitochondrion	11.01	32.13

Protein Annotations

KEGG:00052+3.2.1.26	KEGG:00500+3.2.1.26	EntrezGene:100788844	Gene3D:2.115.10.20	Gene3D:2.60.120.560	MapMan:3.1.4.1.2
EMBL:ACUP02002827	InterPro:Beta-fructofuranosidase	InterPro:ConA-like_dom_sf	EnsemblPlantsGene:GLYMA_05G056300	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0004564	GO:GO:0004575	GO:GO:0005575	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016798	InterPro:Glyco_hydro_32
InterPro:Glyco_hydro_32_AS	InterPro:Glyco_hydro_32_C	InterPro:Glyco_hydro_32_N	InterPro:Glyco_hydro_beta-prop_sf	UniProt:I1K0L4	InterPro:IPR023296
EnsemblPlants:KRH57351	ProteinID:KRH57351	ProteinID:KRH57351.1	PFAM:PF00251	PFAM:PF08244	PFAM:PF11837
ScanProsite:PS00609	PANTHER:PTHR31953	PANTHER:PTHR31953:SF31	SMART:SM00640	SUPFAM:SSF49899	SUPFAM:SSF75005
TMHMM:TMhelix	UniParc:UPI0002339870	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:5148962..5154038

Molecular Weight (calculated)

71762.4 Da

IEP (calculated)

5.825

GRAVY (calculated)

-0.363

Length

645 amino acids

Sequence
(BLAST)

001: MDHRKPLLPT SSDAAPNPHT RKDLLLVICG LLLLSSLVAF GGYRASNAPH ADVASATSND EQRSPTSVPS PKWYPVSRGV SSGVSEKSSS MLFAVKDGAS
101: KAFPWDNSML SWQRTAFHFQ PEKNWMNDPN GPMYYKGWYH FFYQYNPNGA VWGDIVWGHA VSRDMIHWLH LPLAMVADQW YDMQGVWTGS ATILPNGEII
201: MLYTGSTNES VQVQNLAYPA NPSDPLLVDW IKYPGNPVLV PPPGIGAKDF RDPTTAWLTS EGKWRITIGS KLNKTGIALV YDTEDFKNYE LKEGLLRAVA
301: GTGMWECVDF FPVSKENENG LDTSINGAEV KHVMKVSLDD DRHDYYSIGT YDEKNVLFTP DDAKNDVGVG LRYDYGIFYA SKTFYDQNKE RRVLWGWIGE
401: SDSEYADVAK GWASVQSIPR TVELDRKTGS NLLQWPVAEI ESLRLRSDEF KNLKAKPGSV VSVDIETATQ LDIVAEFEID KETLDKIPQS NEEYTCSTSG
501: GSKQRGALGP FGLLVLADEG LSEYTPQYFY VIKGSNGNLK TSFCADQSRS SQANDVRKQI VGSAVPVLKG EKFSLRILVD HSIVESFAQG GRTVVTSRVY
601: PTKAIYGAAR LFLFNNATEA TVTASLKVWQ MNSAFIRPFH PDQKS

Best Arabidopsis Sequence Match ( AT1G12240.1 )
(BLAST)

001: MASSDALLPI SAREEEPLCP YTRLPMADPN QETHGPRRRR PFKGLLAVSF GLLFIAFYVA LIATHDGSRS NDEGIDETET ITSRARLAGV SEKRNDGLWK
101: LSGDRNTPAF EWNNSMLSWQ RTAFHFQPEQ NWMNDPNGPL FYKGWYHFFY QYNPNAAVWG DIVWGHAVSR DLIHWVHLPI AMVADQWYDS NGVWTGSATF
201: LPDGSIVMLY TGSTDKAVQV QNLAYPEDPN DPLLLKWVKF PGNPVLVPPP GILPKDFRDP TTAWKTSEGK WRITIGSKLN KTGISLVYDT IDFKTYEKLD
301: TLLHRVPNTG MWECVDFYPV SKTAGNGLDT SVNGPDVKHI VKASMDDTRF DHYAVGTYFD SNGTWIPDDP TIDVGMTASL RYDYGKFYAS KSFYDQNKGR
401: RVLWSWIGES DSEASDVQKG WSSLQGIPRT VVLDTKTGKN LVQWPVEEIK SLRLSSKQFD LEVGPGSVVP VDVGSAAQLD IEAEFEINKE SLDKIIGNAS
501: VVAEAEEFSC EKSGGSTVRG ALGPFGFSVL ATESLSEQTP VYFYVAKGKD SELKTFFCTD TSRSSVANDV VKPIYGSVVP VLKGEKLTMR ILVDHSIVEA
601: FGQGGRTCIT SRVYPTTAIY GAAKLFLFNN ALDATVTASF TVWQMNSAFI HPYSDEAVRA LSRT

Arabidopsis Description

BFRUCT4Acid beta-fructofuranosidase 4, vacuolar [Source:UniProtKB/Swiss-Prot;Acc:Q39041]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.