CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
vacuole 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11076
KRH21197
KRH42923
KRH42926
KRH45251
KRH59035
KRH59036

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12240.1	KRH11076	AT4G19030.1	21798944
AT1G12240.1	KRH21197	AT4G19030.1	21798944
AT1G12240.1	KRH42923	AT4G19030.1	21798944
AT1G12240.1	KRH42926	AT4G19030.1	21798944
AT1G12240.1	KRH45251	AT4G19030.1	21798944
AT1G12240.1	KRH59035	AT4G19030.1	21798944
AT1G12240.1	KRH59036	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28036	Soybean	vacuole	85.04	92.73
KRH04082	Soybean	endoplasmic reticulum	73.78	77.21
KRH57351	Soybean	endoplasmic reticulum	73.78	77.21
VIT_02s0154g00090.t01	Wine grape	vacuole	55.41	71.37
GSMUA_Achr11P...	Banana	mitochondrion, vacuole	50.81	64.6
CDY39804	Canola	vacuole	58.96	63.07
Bra027030.1-P	Field mustard	vacuole	61.04	63.0
CDY31826	Canola	vacuole	61.04	63.0
CDY46906	Canola	vacuole	61.04	63.0
GSMUA_Achr5P19880_001	Banana	mitochondrion, vacuole	52.3	62.81
AT1G62660.1	Thale cress	vacuole	60.3	62.81
CDY03265	Canola	vacuole	58.52	62.6
CDY30056	Canola	vacuole	61.04	62.52
PGSC0003DMT400012217	Potato	cytosol, peroxisome, plastid, vacuole	60.44	62.48
Solyc08g079080.2.1	Tomato	unclear	60.3	62.42
CDY26548	Canola	vacuole	61.19	62.29
AT1G12240.1	Thale cress	vacuole	61.04	62.05
GSMUA_Achr1P11470_001	Banana	peroxisome, plastid, vacuole	50.81	61.91
CDX98080	Canola	cytosol, peroxisome, vacuole	60.3	61.48
Bra036653.1-P	Field mustard	vacuole	59.56	61.37
Bra019749.1-P	Field mustard	nucleus, peroxisome, vacuole	60.0	61.18
CDY03264	Canola	cytosol, golgi, vacuole	54.37	60.56
HORVU2Hr1G091990.6	Barley	cytosol	21.93	60.41
Bra036652.1-P	Field mustard	cytosol, golgi, plastid, vacuole	53.48	60.37
CDY15984	Canola	vacuole	60.74	60.29
CDY39805	Canola	cytosol, golgi, plastid, vacuole	53.78	59.9
Bra026984.1-P	Field mustard	vacuole	61.19	59.86
KRH39981	Soybean	vacuole	55.26	59.21
KRH23803	Soybean	vacuole	53.63	58.96
Os04t0535600-01	Rice	extracellular, mitochondrion, plasma membrane	56.0	57.62
KRH56348	Soybean	vacuole	55.11	57.59
TraesCS2B01G403000.1	Wheat	vacuole	55.7	57.06
TraesCS2A01G386100.2	Wheat	plastid, vacuole	54.96	56.55
TraesCS2D01G382600.2	Wheat	vacuole	55.41	56.41
Zm00001d025943_P001	Maize	vacuole	55.11	55.61
Zm00001d014947_P001	Maize	plasma membrane	55.26	55.42
Os02t0106100-01	Rice	plasma membrane	54.22	55.29
TraesCS7A01G010200.1	Wheat	endoplasmic reticulum, peroxisome, vacuole	53.78	55.25
TraesCS4A01G484800.1	Wheat	endoplasmic reticulum, peroxisome, vacuole	53.78	55.17
Zm00001d002830_P001	Maize	extracellular	54.37	55.02
TraesCS7D01G010000.2	Wheat	endoplasmic reticulum, peroxisome, vacuole	53.63	55.02
Zm00001d054075_P001	Maize	plastid, vacuole	44.59	54.93
TraesCS4A01G485500.1	Wheat	mitochondrion	41.19	54.62
TraesCS7D01G009300.1	Wheat	mitochondrion	40.89	54.22
OQU84152	Sorghum	endoplasmic reticulum, peroxisome, plastid, vacuole	54.07	54.15
HORVU7Hr1G001070.1	Barley	cytosol, peroxisome, vacuole	52.89	54.09
TraesCS6D01G026600.2	Wheat	endoplasmic reticulum, peroxisome, vacuole	52.3	52.61
TraesCS6A01G023100.1	Wheat	vacuole	52.44	52.52
HORVU6Hr1G004000.2	Barley	endoplasmic reticulum, peroxisome, vacuole	51.26	52.42
TraesCS6D01G026300.2	Wheat	peroxisome, plastid, vacuole	52.44	52.37
TraesCS6B01G031700.1	Wheat	endoplasmic reticulum, peroxisome, vacuole	52.0	52.15
TraesCS6B01G031500.1	Wheat	extracellular, peroxisome, vacuole	52.15	52.07
TraesCS6B01G031300.1	Wheat	peroxisome, plastid, vacuole	51.85	52.01
TraesCS6D01G026500.2	Wheat	peroxisome, plastid, vacuole	52.15	51.92
TraesCS6A01G023300.2	Wheat	peroxisome, plastid, vacuole	51.56	51.71
TraesCS6D01G026400.1	Wheat	peroxisome, plastid, vacuole	51.41	51.64
HORVU6Hr1G004010.8	Barley	peroxisome, plastid, vacuole	51.85	51.55
TraesCS6A01G023200.1	Wheat	peroxisome, plastid, vacuole	51.11	51.49
TraesCS6B01G031600.1	Wheat	peroxisome, plastid, vacuole	50.67	51.27
TraesCS4A01G485400.2	Wheat	golgi	46.07	50.49
TraesCS7A01G009700.1	Wheat	mitochondrion, plastid	45.19	50.08
OQU82023	Sorghum	plastid	52.15	50.0
TraesCS4A01G485800.1	Wheat	vacuole	48.0	50.0
HORVU7Hr1G000270.1	Barley	mitochondrion	47.11	49.77
TraesCS4A01G485000.2	Wheat	endoplasmic reticulum, peroxisome, vacuole	45.19	49.76
TraesCS7D01G008900.1	Wheat	vacuole	47.7	49.69
TraesCS7A01G009400.1	Wheat	vacuole	47.7	49.61
TraesCS7D01G009400.2	Wheat	cytosol, plastid, vacuole	45.63	49.6
TraesCS4A01G485900.1	Wheat	cytosol, peroxisome, vacuole	47.56	49.54
TraesCS7A01G009800.2	Wheat	golgi, unclear	45.48	49.52
TraesCS4A01G485600.1	Wheat	mitochondrion, vacuole	47.56	49.38
TraesCS7A01G009200.2	Wheat	vacuole	47.26	49.23
TraesCS7D01G008800.2	Wheat	cytosol, plastid, vacuole	46.96	49.22
TraesCS7D01G008700.1	Wheat	vacuole	48.15	49.09
TraesCS7D01G055000.1	Wheat	plastid	46.67	48.99
TraesCS4A01G486000.1	Wheat	golgi	48.15	48.95
TraesCS7A01G009100.1	Wheat	endoplasmic reticulum, peroxisome, vacuole	47.85	48.87
HORVU0Hr1G018850.4	Barley	vacuole	44.44	48.86
TraesCS7A01G060400.1	Wheat	cytosol, peroxisome, plastid, vacuole	46.52	48.83
TraesCS7A01G009600.3	Wheat	mitochondrion	47.11	48.77
HORVU7Hr1G000250.3	Barley	vacuole	46.96	48.25
TraesCS7D01G009700.1	Wheat	endoplasmic reticulum, peroxisome, vacuole	44.74	46.97
HORVU7Hr1G001040.6	Barley	plastid	46.07	46.63
TraesCS7A01G009500.3	Wheat	plastid	44.59	46.52
KRH23303	Soybean	nucleus	39.41	46.34
KRH10019	Soybean	nucleus, vacuole	39.26	46.09
TraesCS7D01G054800.3	Wheat	mitochondrion, vacuole	47.85	46.08
TraesCS4A01G485700.1	Wheat	cytosol, mitochondrion, peroxisome, plastid, vacuole	45.48	46.03
KRH32774	Soybean	endoplasmic reticulum, vacuole	39.26	46.01
KRG89527	Soybean	vacuole	37.78	45.95
KRH67945	Soybean	vacuole	35.85	45.32
TraesCS7A01G060300.2	Wheat	mitochondrion	47.11	45.3
TraesCS7D01G009100.1	Wheat	cytosol, mitochondrion, peroxisome, vacuole	44.74	45.14
KRH44130	Soybean	vacuole	37.63	45.04
HORVU7Hr1G000260.1	Barley	plastid	48.3	45.03
KRG89524	Soybean	cytosol	27.85	44.76
KRH44129	Soybean	vacuole	33.93	44.55
KRH47104	Soybean	nucleus	37.19	44.5
KRH05441	Soybean	cytosol	35.7	43.66
KRG96203	Soybean	vacuole	35.56	43.32
KRG89530	Soybean	vacuole	29.63	43.2
KRH15569	Soybean	vacuole	36.44	42.71
HORVU0Hr1G018840.1	Barley	cytosol, plastid, vacuole	16.3	42.47
TraesCS7D01G009200.2	Wheat	cytosol, mitochondrion, plasma membrane, plastid, vacuole	47.56	42.46
KRH05439	Soybean	cytosol	34.67	41.64
KRG89522	Soybean	cytosol, nucleus, vacuole	18.96	40.89
KRH15559	Soybean	cytosol	20.0	38.24
KRH08807	Soybean	cytosol, nucleus, vacuole	10.22	32.39
KRH15564	Soybean	mitochondrion	10.37	31.67

Protein Annotations

KEGG:00052+3.2.1.26	KEGG:00500+3.2.1.26	EntrezGene:100798772	Gene3D:2.115.10.20	Gene3D:2.60.120.560	MapMan:3.1.4.1.2
EMBL:ACUP02000670	InterPro:Beta-fructofuranosidase	InterPro:ConA-like_dom_sf	EnsemblPlantsGene:GLYMA_01G211000	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0004564	GO:GO:0004575	GO:GO:0005575	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016798	InterPro:Glyco_hydro_32
InterPro:Glyco_hydro_32_AS	InterPro:Glyco_hydro_32_C	InterPro:Glyco_hydro_32_N	InterPro:Glyco_hydro_beta-prop_sf	UniProt:I1J9X6	InterPro:IPR023296
EnsemblPlants:KRH77397	ProteinID:KRH77397	ProteinID:KRH77397.1	PFAM:PF00251	PFAM:PF08244	PFAM:PF11837
ScanProsite:PS00609	PANTHER:PTHR31953	PANTHER:PTHR31953:SF31	SMART:SM00640	SUPFAM:SSF49899	SUPFAM:SSF75005
TMHMM:TMhelix	UniParc:UPI000296F22E	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:54261628..54266511

Molecular Weight (calculated)

75066.7 Da

IEP (calculated)

5.470

GRAVY (calculated)

-0.360

Length

675 amino acids

Sequence
(BLAST)

001: MGSPNTRTSS SSDSELPCSN YIPVPDGPHS PAEPARREVI VIFCGLLVLV SLVAFNGYSW AHSNGHDGDH HHASSSLPTT LLTVTPNELE LSPDTVPWST
101: WQTTLSRGVS AGVSEKSSWL FNSNNGNGES YPWNNSMLSW QRTAYHFQPE KNWMNDPNGP MYYKGWYHFF YQYNPNGAVW GDIVWGHAVS RDMIHWFHLP
201: LAMVADQWYD KNGVWTGSAT ILPDGQVIML YTGSTNESMQ VQNLAYPADP SDPLLVDWIK YPANPVLFPP PGIDAKDFRD PTTAWITSEG KWRISIGSKL
301: NKTGIALVYD TNDFKTFERV EGVLHVVPGT GMWECVDFFP VSSKGENGLD TSINGENVKH VVKVSLDDDR HDYYALGTYD EKNVKFTPDD FNNDVGIGLR
401: YDYGIFYASK TFYDQSKGRR VLWGWIGESD SEYADVAKGW ASVQGIPRTV ALDKKTGSNL IQWPVAEVES LRLRSDEFQN LKVKPGSVVP LEIGTAAQLD
501: IVAEFEIDKK ALEKTGQSNK EYKCSTSGGS TERGTIGPFG LLVLADDDLS EYTPTYFYVV KGSHGQLKTS FCSDQSRSSL ATDVSKKIFG SFVPVLKDEK
601: LSVRILVDHS IVESFAQGGR TCVTSRVYPT KAIYGAARLF LFNNATEATV TASVKVWQMN SAFIRPFHPD QSNSF

Best Arabidopsis Sequence Match ( AT1G12240.1 )
(BLAST)

001: MASSDALLPI SAREEEPLCP YTRLPMADPN QETHGPRRRR PFKGLLAVSF GLLFIAFYVA LIATHDGSRS NDEGIDETET ITSRARLAGV SEKRNDGLWK
101: LSGDRNTPAF EWNNSMLSWQ RTAFHFQPEQ NWMNDPNGPL FYKGWYHFFY QYNPNAAVWG DIVWGHAVSR DLIHWVHLPI AMVADQWYDS NGVWTGSATF
201: LPDGSIVMLY TGSTDKAVQV QNLAYPEDPN DPLLLKWVKF PGNPVLVPPP GILPKDFRDP TTAWKTSEGK WRITIGSKLN KTGISLVYDT IDFKTYEKLD
301: TLLHRVPNTG MWECVDFYPV SKTAGNGLDT SVNGPDVKHI VKASMDDTRF DHYAVGTYFD SNGTWIPDDP TIDVGMTASL RYDYGKFYAS KSFYDQNKGR
401: RVLWSWIGES DSEASDVQKG WSSLQGIPRT VVLDTKTGKN LVQWPVEEIK SLRLSSKQFD LEVGPGSVVP VDVGSAAQLD IEAEFEINKE SLDKIIGNAS
501: VVAEAEEFSC EKSGGSTVRG ALGPFGFSVL ATESLSEQTP VYFYVAKGKD SELKTFFCTD TSRSSVANDV VKPIYGSVVP VLKGEKLTMR ILVDHSIVEA
601: FGQGGRTCIT SRVYPTTAIY GAAKLFLFNN ALDATVTASF TVWQMNSAFI HPYSDEAVRA LSRT

Arabidopsis Description

BFRUCT4Acid beta-fructofuranosidase 4, vacuolar [Source:UniProtKB/Swiss-Prot;Acc:Q39041]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.