Skip to main content
crop-pal logo
Soybean
Search for another protein from :
Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 2
  • vacuole 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:mitochondrion, nucleus, vacuole
BaCelLo:nucleus
EpiLoc:vacuole
MultiLoc:vacuole
Plant-mPloc:vacuole
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:vacuole
 endoplasmic reticulum: 23041469
endoplasmic reticulum: 28499913
msms PMID: 23041469 doi
S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa
National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRH11076
KRH21197
KRH42923
KRH42926
KRH45251
KRH59035
KRH59036

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G12240.1 KRH11076 AT4G19030.1 21798944
AT1G12240.1 KRH21197 AT4G19030.1 21798944
AT1G12240.1 KRH42923 AT4G19030.1 21798944
AT1G12240.1 KRH42926 AT4G19030.1 21798944
AT1G12240.1 KRH45251 AT4G19030.1 21798944
AT1G12240.1 KRH59035 AT4G19030.1 21798944
AT1G12240.1 KRH59036 AT4G19030.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH57351 Soybean endoplasmic reticulum 95.19 95.19
KRH77397 Soybean endoplasmic reticulum 77.21 73.78
KRH28036 Soybean vacuole 69.61 72.54
VIT_02s0154g00090.t01 Wine grape vacuole 58.14 71.56
CDY30056 Canola vacuole 64.65 63.28
GSMUA_Achr5P19880_001 Banana mitochondrion, vacuole 55.04 63.17
GSMUA_Achr11P... Banana mitochondrion, vacuole 51.94 63.09
HORVU2Hr1G091990.6 Barley cytosol 23.88 62.86
AT1G62660.1 Thale cress vacuole 63.1 62.81
CDY39804 Canola vacuole 61.09 62.44
CDX98080 Canola cytosol, peroxisome, vacuole 63.88 62.24
AT1G12240.1 Thale cress vacuole 64.03 62.2
Bra019749.1-P Field mustard nucleus, peroxisome, vacuole 63.57 61.93
GSMUA_Achr1P11470_001 Banana peroxisome, plastid, vacuole 53.18 61.91
CDY26548 Canola vacuole 63.57 61.84
CDY03265 Canola vacuole 60.47 61.81
CDY31826 Canola vacuole 62.64 61.77
Bra027030.1-P Field mustard vacuole 62.33 61.47
CDY46906 Canola vacuole 62.33 61.47
Solyc08g079080.2.1 Tomato unclear 61.86 61.2
PGSC0003DMT400012217 Potato cytosol, peroxisome, plastid, vacuole 61.86 61.1
CDY03264 Canola cytosol, golgi, vacuole 57.21 60.89
Bra036653.1-P Field mustard vacuole 61.71 60.76
Bra036652.1-P Field mustard cytosol, golgi, plastid, vacuole 56.12 60.54
CDY39805 Canola cytosol, golgi, plastid, vacuole 56.59 60.23
Bra026984.1-P Field mustard vacuole 63.57 59.42
CDY15984 Canola vacuole 62.64 59.41
KRH23803 Soybean vacuole 56.12 58.96
KRH39981 Soybean vacuole 57.52 58.89
Os04t0535600-01 Rice extracellular, mitochondrion, plasma membrane 58.6 57.62
TraesCS2A01G386100.2 Wheat plastid, vacuole 58.14 57.16
TraesCS2B01G403000.1 Wheat vacuole 58.29 57.06
TraesCS2D01G382600.2 Wheat vacuole 58.29 56.71
KRH56348 Soybean vacuole 56.43 56.35
Zm00001d025943_P001 Maize vacuole 57.67 55.61
Os02t0106100-01 Rice plasma membrane 56.43 54.98
Zm00001d014947_P001 Maize plasma membrane 57.36 54.98
OQU84152 Sorghum endoplasmic reticulum, peroxisome, plastid, vacuole 56.9 54.45
TraesCS7A01G010200.1 Wheat endoplasmic reticulum, peroxisome, vacuole 55.35 54.34
Zm00001d002830_P001 Maize extracellular 56.12 54.27
Zm00001d054075_P001 Maize plastid, vacuole 46.05 54.2
TraesCS4A01G484800.1 Wheat endoplasmic reticulum, peroxisome, vacuole 55.19 54.1
TraesCS7D01G010000.2 Wheat endoplasmic reticulum, peroxisome, vacuole 55.04 53.95
TraesCS6A01G023100.1 Wheat vacuole 55.66 53.26
HORVU7Hr1G001070.1 Barley cytosol, peroxisome, vacuole 54.26 53.03
TraesCS6D01G026300.2 Wheat peroxisome, plastid, vacuole 55.19 52.66
TraesCS4A01G485500.1 Wheat mitochondrion 41.55 52.65
TraesCS7D01G009300.1 Wheat mitochondrion 41.55 52.65
HORVU6Hr1G004000.2 Barley endoplasmic reticulum, peroxisome, vacuole 53.64 52.42
TraesCS6D01G026600.2 Wheat endoplasmic reticulum, peroxisome, vacuole 54.42 52.31
TraesCS6B01G031500.1 Wheat extracellular, peroxisome, vacuole 54.57 52.07
TraesCS6B01G031700.1 Wheat endoplasmic reticulum, peroxisome, vacuole 54.26 52.01
TraesCS6D01G026400.1 Wheat peroxisome, plastid, vacuole 54.11 51.93
TraesCS6A01G023300.2 Wheat peroxisome, plastid, vacuole 53.95 51.71
TraesCS6A01G023200.1 Wheat peroxisome, plastid, vacuole 53.64 51.64
TraesCS6B01G031600.1 Wheat peroxisome, plastid, vacuole 53.33 51.57
TraesCS6B01G031300.1 Wheat peroxisome, plastid, vacuole 53.8 51.56
TraesCS6D01G026500.2 Wheat peroxisome, plastid, vacuole 54.11 51.47
HORVU6Hr1G004010.8 Barley peroxisome, plastid, vacuole 54.11 51.4
TraesCS4A01G485400.2 Wheat golgi 48.22 50.49
TraesCS4A01G485000.2 Wheat endoplasmic reticulum, peroxisome, vacuole 47.75 50.24
TraesCS4A01G485800.1 Wheat vacuole 50.08 49.85
TraesCS7D01G008900.1 Wheat vacuole 49.92 49.69
TraesCS7A01G009800.2 Wheat golgi, unclear 47.75 49.68
HORVU7Hr1G000270.1 Barley mitochondrion 49.15 49.61
TraesCS7D01G009400.2 Wheat cytosol, plastid, vacuole 47.75 49.6
TraesCS7A01G009400.1 Wheat vacuole 49.61 49.31
TraesCS7A01G009700.1 Wheat mitochondrion, plastid 46.51 49.26
TraesCS4A01G485900.1 Wheat cytosol, peroxisome, vacuole 49.3 49.07
TraesCS7D01G008800.2 Wheat cytosol, plastid, vacuole 48.99 49.07
TraesCS7A01G009200.2 Wheat vacuole 49.15 48.92
OQU82023 Sorghum plastid 53.33 48.86
TraesCS7A01G060400.1 Wheat cytosol, peroxisome, plastid, vacuole 48.37 48.52
TraesCS7D01G055000.1 Wheat plastid 48.37 48.52
TraesCS7D01G008700.1 Wheat vacuole 49.77 48.49
TraesCS7A01G009100.1 Wheat endoplasmic reticulum, peroxisome, vacuole 49.61 48.41
HORVU7Hr1G000250.3 Barley vacuole 49.15 48.25
TraesCS4A01G486000.1 Wheat golgi 49.61 48.19
HORVU0Hr1G018850.4 Barley vacuole 45.58 47.88
TraesCS7D01G009700.1 Wheat endoplasmic reticulum, peroxisome, vacuole 47.6 47.74
TraesCS7A01G009600.3 Wheat mitochondrion 47.6 47.09
TraesCS4A01G485600.1 Wheat mitochondrion, vacuole 47.44 47.08
HORVU7Hr1G001040.6 Barley plastid 48.06 46.48
TraesCS7A01G009500.3 Wheat plastid 45.27 45.13
KRH10019 Soybean nucleus, vacuole 40.16 45.04
KRH23303 Soybean nucleus 40.0 44.95
HORVU7Hr1G000260.1 Barley plastid 50.08 44.61
TraesCS4A01G485700.1 Wheat cytosol, mitochondrion, peroxisome, plastid, vacuole 46.05 44.53
KRH47104 Soybean nucleus 38.91 44.5
KRG89527 Soybean vacuole 38.14 44.32
KRH32774 Soybean endoplasmic reticulum, vacuole 39.38 44.1
TraesCS7D01G054800.3 Wheat mitochondrion, vacuole 47.91 44.08
KRH67945 Soybean vacuole 36.43 44.01
TraesCS7D01G009100.1 Wheat cytosol, mitochondrion, peroxisome, vacuole 45.58 43.95
TraesCS7A01G060300.2 Wheat mitochondrion 47.6 43.73
KRH44129 Soybean vacuole 34.73 43.58
KRH44130 Soybean vacuole 37.98 43.44
KRG89524 Soybean cytosol 28.22 43.33
KRH15569 Soybean vacuole 38.29 42.88
KRH05441 Soybean cytosol 36.43 42.57
KRG89530 Soybean vacuole 29.92 41.68
KRG96203 Soybean vacuole 35.66 41.52
HORVU0Hr1G018840.1 Barley cytosol, plastid, vacuole 16.59 41.31
KRH05439 Soybean cytosol 35.97 41.28
TraesCS7D01G009200.2 Wheat cytosol, mitochondrion, plasma membrane, plastid, vacuole 48.22 41.14
KRG89522 Soybean cytosol, nucleus, vacuole 18.91 38.98
KRH15559 Soybean cytosol 20.78 37.96
KRH15564 Soybean mitochondrion 11.16 32.58
KRH08807 Soybean cytosol, nucleus, vacuole 10.7 32.39
Protein Annotations
KEGG:00052+3.2.1.26KEGG:00500+3.2.1.26EntrezGene:100799487Gene3D:2.115.10.20Gene3D:2.60.120.560MapMan:3.1.4.1.2
EMBL:ACUP02010379InterPro:Beta-fructofuranosidaseInterPro:ConA-like_dom_sfEnsemblPlantsGene:GLYMA_17G138500GO:GO:0003674GO:GO:0003824
GO:GO:0004553GO:GO:0004564GO:GO:0004575GO:GO:0005575GO:GO:0005975GO:GO:0008150
GO:GO:0008152GO:GO:0016020GO:GO:0016021GO:GO:0016787GO:GO:0016798InterPro:Glyco_hydro_32
InterPro:Glyco_hydro_32_ASInterPro:Glyco_hydro_32_CInterPro:Glyco_hydro_32_NInterPro:Glyco_hydro_beta-prop_sfUniProt:I1MUX8InterPro:IPR023296
EnsemblPlants:KRH04082ProteinID:KRH04082ProteinID:KRH04082.1PFAM:PF00251PFAM:PF08244PFAM:PF11837
ScanProsite:PS00609PANTHER:PTHR31953PANTHER:PTHR31953:SF31SMART:SM00640SUPFAM:SSF49899SUPFAM:SSF75005
TMHMM:TMhelixUniParc:UPI000233E94DSEG:seg:::
Description
hypothetical protein
Coordinates
chr17:-:11222613..11227294
Molecular Weight (calculated)
71996.5 Da
IEP (calculated)
4.997
GRAVY (calculated)
-0.402
Length
645 amino acids
Sequence
(BLAST)
001: MDHRKPLLPT SSDDAPNPRT RKDLVLMICG LFLLSSLVAF GGYRASNAPH ADVSSPASND EQPSPTSVPS PKWYPVSRGV SSGVSEKSSS MLFAVKDGAS
101: EAFPWDNSML SWQRTAFHFQ PEKNWMNDPN GPMYYKGWYH FFYQYNPNGA VWGDIVWGHA VSRDMIHWLH LPLAMVADQW YDMQGVWTGS ATILPNGEII
201: MLYTGSTNES VQVQNLAYPA DPSDPLLVDW IKYPGNPVLV PPPGIGTKDF RDPTTAWLTS EGKWRITIGS KLNKTGIALV YDTEDFKSYE LKEGLLRAVD
301: GTGMWECVDF FPVSKKNENG LDTSVNGDEV KHVMKVSLDD DRHDYYAIGT YDEKSVLFTP DDAKNDVGVG LRYDYGIFYA SKTFYDQNKE RRLLWGWIGE
401: SDSEYADVAK GWASVQSIPR TVELDRKTGS NLLQWPVAEV ESLRLRSDEF KNLKAKPGSV VSIDIETATQ LDIVAEFEID KETLEKTPES NEEYTCGNSG
501: GSKQRGALGP FGLLVLADEG LFEYTPQYFY VIKGSNGNLK TSFCADQSRS SQANDVRKQI VGSAVPVLKD EKFSLRILVD HSIVESFAQG GRTVVTSRVY
601: PTKAIYGAAR LFLFNNATEA TVTASLNVWQ MNSAFIRPFH PDQKN
Best Arabidopsis Sequence Match ( AT1G62660.1 )
(BLAST)
001: MASTEALLPV TSLQDPLSES RSDQIPETRR RRPIKVHLAV YSGLLLIALY VTLIVTHDGS KAEIATESRP RMAGVSEKSN DGVWISSDDG KVEAFPWNNT
101: ILSWQRTAFH FQPEKNWMND PNGPLFYKGW YHFFYQYNPN AAVWGDIVWG HAVSKDLIHW LYLPIAMVPD QWYDANGVWT GSATFLDDGS IVMLYTGSTD
201: EFVQVQNLAY PEDPSDPLLL KWVKFSGNPV LVPPPGIGAK DFRDPTTAWK TSSGKWRITI GSKINRTGIS LIYDTTDFKT YEKHETLLHQ VPNTGMWECV
301: DFYPVSKTQL NGLDTSVNGP DVKHVIKASM DDTRIDHYAI GTYDDSNATW VPDNPSIDVG ISTGLRYDYG KYYASKTFYD QNKGRRILWG WIGESDSEAA
401: DVQKGWSSVQ GIPRTVVLDT RTHKNLVQWP VEEIKSLRLS SKKFDMTIGP GTVVPVDVGS ATQLDIEAEF EIKTDDLKLF FDDDSVEADN KFSCETNGGS
501: TARGALGPFG FSVLADEGLS EQTPVYFYVT KGKHSKLNTV FCTDTSRSTL ANDVVKPIYG SFVPVLKGEK LTMRILVDHS IVEGFAQGGR SCITSRVYPT
601: KAIYGATKLF LFNNAIDATV TASFTVWQMN NAFIHPYSSD DLGVPSST
Arabidopsis Description
BFRUCT3Acid beta-fructofuranosidase 3, vacuolar [Source:UniProtKB/Swiss-Prot;Acc:Q43348]
SUBAcon: [vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.