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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 5
  • golgi 5
  • plastid 4
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:mitochondrion, plastid, secretory
BaCelLo:secretory
EpiLoc:plastid
iPSORT:secretory
MultiLoc:plastid
Plant-mPloc:mitochondrion, plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:mitochondrion
 nucleus: 21132161
endoplasmic reticulum: 27224218
mitochondrion: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRG93501
KRH01127
KRH18503
KRH40133

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G29130.1 KRG93501 AT3G01280.1 17965176
AT4G29130.1 KRH01127 AT3G01280.1 17965176
AT4G29130.1 KRH18503 AT3G01280.1 17965176
AT4G29130.1 KRH40133 AT3G01280.1 17965176
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH60208 Soybean endoplasmic reticulum 97.99 97.99
KRH74246 Soybean plastid 85.14 85.48
KRH48988 Soybean nucleus 84.34 84.34
VIT_11s0016g03070.t01 Wine grape plastid 83.53 83.7
KRH74248 Soybean nucleus 82.13 82.46
Bra036699.1-P Field mustard plastid 77.31 77.15
CDY03331 Canola cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 77.31 77.15
CDY48733 Canola plastid 77.31 77.15
AT4G29130.1 Thale cress plastid 76.71 77.02
Bra039025.1-P Field mustard cytosol 77.11 76.8
CDY35895 Canola plastid 76.71 76.4
CDX82746 Canola cytosol 76.31 76.15
GSMUA_Achr3P16320_001 Banana plastid 76.31 76.0
Solyc12g008510.1.1 Tomato plastid 75.9 75.75
GSMUA_Achr6P26380_001 Banana plastid 75.7 75.4
PGSC0003DMT400000795 Potato endoplasmic reticulum 75.1 74.95
AT2G19860.1 Thale cress cytosol 75.5 74.9
KRH44270 Soybean endoplasmic reticulum 70.88 71.75
GSMUA_Achr3P31700_001 Banana cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 70.88 71.6
TraesCS1B01G366400.1 Wheat mitochondrion 70.68 71.4
TraesCS1D01G355200.2 Wheat plastid 70.08 70.79
HORVU0Hr1G001440.2 Barley cytosol, mitochondrion 69.28 66.35
Os01t0742500-01 Rice mitochondrion 67.07 66.01
Os05t0187100-02 Rice cytosol 61.24 65.87
Os01t0190400-01 Rice cytosol 60.44 65.72
EES19165 Sorghum cytosol 60.24 65.36
Zm00001d038792_P001 Maize plasma membrane 66.27 65.09
TraesCS1D01G123700.1 Wheat cytosol 60.44 65.01
EES03587 Sorghum plastid 65.86 64.82
TraesCS1B01G142000.1 Wheat cytosol 60.04 64.58
Os05t0532600-01 Rice cytosol 17.47 64.44
HORVU1Hr1G028200.1 Barley cytosol 59.84 64.36
TraesCS3D01G110300.2 Wheat cytosol 59.44 64.35
TraesCS3B01G127500.1 Wheat cytosol 59.24 64.27
TraesCS1B01G355600.1 Wheat golgi 65.26 64.1
EES18534 Sorghum endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole 65.26 64.1
Zm00001d010796_P001 Maize plasma membrane 65.46 64.05
Zm00001d043511_P001 Maize mitochondrion 65.06 64.03
TraesCS1D01G344600.1 Wheat plastid 65.06 63.91
Zm00001d037689_P001 Maize cytosol, extracellular 58.84 63.83
KRH47202 Soybean cytosol 51.81 63.7
TraesCS3B01G320500.1 Wheat endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole 47.39 63.61
TraesCS3D01G286000.1 Wheat mitochondrion, plastid 62.65 63.03
Os05t0522500-01 Rice mitochondrion 63.86 62.72
TraesCS3B01G309700.3 Wheat plastid 63.45 62.33
TraesCS3D01G276000.3 Wheat plastid 63.05 61.93
HORVU3Hr1G070690.1 Barley plasma membrane 63.05 61.69
EES03543 Sorghum endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole 62.05 61.31
GSMUA_Achr8P27620_001 Banana plastid 72.29 60.91
Zm00001d043607_P001 Maize plasma membrane 60.64 59.92
Zm00001d039512_P010 Maize extracellular 60.04 59.44
Os01t0722700-01 Rice plastid 34.34 58.16
Os07t0446800-00 Rice plastid 58.03 58.03
GSMUA_Achr6P05500_001 Banana plastid 58.63 57.71
Bra031105.1-P Field mustard cytosol 15.26 57.58
KRH27814 Soybean endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole 57.23 57.23
EES00147 Sorghum cytosol 58.84 56.89
KRH77671 Soybean plastid 56.83 56.83
HORVU3Hr1G068620.6 Barley cytosol 62.05 56.39
KRH24099 Soybean endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole 57.03 56.35
KRH29072 Soybean plastid 56.63 55.95
HORVU1Hr1G075680.2 Barley plastid 51.0 55.46
KRH05943 Soybean plastid 53.61 53.4
KRH17426 Soybean plastid 53.61 53.29
KRH58185 Soybean endoplasmic reticulum, mitochondrion 42.97 43.67
KRH04349 Soybean endoplasmic reticulum, mitochondrion 42.57 43.27
TraesCS7A01G479500.1 Wheat cytosol, endoplasmic reticulum 8.84 43.14
KRH04729 Soybean cytosol 12.45 39.74
KRH38576 Soybean cytosol 21.69 36.49
Os01t0722800-00 Rice cytosol, plasma membrane 0.0 0.0
Protein Annotations
KEGG:00010+2.7.1.1KEGG:00051+2.7.1.1KEGG:00052+2.7.1.1KEGG:00500+2.7.1.1KEGG:00520+2.7.1.1KEGG:00521+2.7.1.1
KEGG:00524+2.7.1.1EntrezGene:100808324MapMan:3.1.4.3Gene3D:3.30.420.40Gene3D:3.40.367.20EMBL:ACUP02004768
EnsemblPlantsGene:GLYMA_08G033300GO:GO:0000166GO:GO:0001678GO:GO:0003674GO:GO:0003824GO:GO:0004340
GO:GO:0004396GO:GO:0005488GO:GO:0005524GO:GO:0005536GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005829GO:GO:0005975GO:GO:0006091GO:GO:0006096
GO:GO:0006139GO:GO:0008150GO:GO:0008152GO:GO:0008865GO:GO:0009056GO:GO:0009058
GO:GO:0009987GO:GO:0016301GO:GO:0016310GO:GO:0016740GO:GO:0016773GO:GO:0019158
GO:GO:0019725GO:GO:0030246GO:GO:0046835GO:GO:0051156InterPro:HexokinaseInterPro:Hexokinase_C
InterPro:Hexokinase_NUniProt:I1KPW6InterPro:IPR001312EnsemblPlants:KRH41490ProteinID:KRH41490ProteinID:KRH41490.1
PFAM:PF00349PFAM:PF03727PRINTS:PR00475PFscan:PS51748PANTHER:PTHR19443PANTHER:PTHR19443:SF52
SUPFAM:SSF53067TMHMM:TMhelixUniParc:UPI0002337DAFSEG:seg::
Description
hypothetical protein
Coordinates
chr8:+:2666864..2671734
Molecular Weight (calculated)
53615.0 Da
IEP (calculated)
5.809
GRAVY (calculated)
0.065
Length
498 amino acids
Sequence
(BLAST)
001: MGKVAVGAAV VCAAAVCAAA ALVVRHRMIS SRKWSRAMAI LKEFEEKCGT PIVKLRQVAD AMDVEMHAGL ASEGGSKLNM LISFVDNLPT GDEEGLYYAL
101: DLGGTNFRVL RVHLGGKDKG VIGQEFEEVS IPPNLMTGSS DALFDFIAAA LAKFVGSEPE GFHPPPGRQR ELGFTFSFPV RQTSIASGTL IKWTKGFNIE
201: DAVGEDVVGE LTKSMEKIGL DMRVAALVND TIGTLAGGRF YNQDVIAAVI LGTGTNAAYV ERAHAIPKWH GLIPKSGDMV INMEWGNFRS SHLPLTEYDL
301: ALDAQSLNPG EQIFEKLISG MYLGEVVRRA LLKMAEEADF FGDTVPPKLK VPFILRTPDM SAMHHDTSSD LKVVGNKLKD ILEISNTSLK MRKIVVELCD
401: IVATRGARLA AAGILGILKK IGRDTVKVGE KQKSVIALDG GLFEHYTKFR ECLESALKEL LGDEAAETIV IEHANDGSGI GAALLAASHS QYLGVEES
Best Arabidopsis Sequence Match ( AT4G29130.1 )
(BLAST)
001: MGKVAVGATV VCTAAVCAVA VLVVRRRMQS SGKWGRVLAI LKAFEEDCAT PISKLRQVAD AMTVEMHAGL ASDGGSKLKM LISYVDNLPS GDEKGLFYAL
101: DLGGTNFRVM RVLLGGKQER VVKQEFEEVS IPPHLMTGGS DELFNFIAEA LAKFVATECE DFHLPEGRQR ELGFTFSFPV KQTSLSSGSL IKWTKGFSIE
201: EAVGQDVVGA LNKALERVGL DMRIAALVND TVGTLAGGRY YNPDVVAAVI LGTGTNAAYV ERATAIPKWH GLLPKSGEMV INMEWGNFRS SHLPLTEFDH
301: TLDFESLNPG EQILEKIISG MYLGEILRRV LLKMAEDAAF FGDTVPSKLR IPFIIRTPHM SAMHNDTSPD LKIVGSKIKD ILEVPTTSLK MRKVVISLCN
401: IIATRGARLS AAGIYGILKK LGRDTTKDEE VQKSVIAMDG GLFEHYTQFS ECMESSLKEL LGDEASGSVE VTHSNDGSGI GAALLAASHS LYLEDS
Arabidopsis Description
HXK1Phosphotransferase [Source:UniProtKB/TrEMBL;Acc:Q0WLE0]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.