CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES16479	Sorghum	cytosol, mitochondrion	96.41	96.72
Zm00001d014906_P003	Maize	plasma membrane	86.27	90.1
Zm00001d014903_P002	Maize	mitochondrion	85.95	89.76
HORVU0Hr1G012510.3	Barley	endoplasmic reticulum	58.01	83.92
Os12t0562400-00	Rice	plasma membrane	78.59	81.53
TraesCS5D01G160300.1	Wheat	mitochondrion	77.78	80.81
GSMUA_Achr5P08470_001	Banana	mitochondrion	65.2	67.4
VIT_06s0004g06650.t01	Wine grape	cytosol	49.84	62.37
GSMUA_AchrUn_...	Banana	mitochondrion	57.52	61.75
Solyc06g007120.2.1	Tomato	nucleus	58.82	61.33
VIT_06s0004g06660.t01	Wine grape	cytosol, mitochondrion	58.01	60.37
CDY71544	Canola	cytosol	47.71	59.96
EER99967	Sorghum	cytosol, mitochondrion	58.33	58.81
CDY52122	Canola	cytosol, mitochondrion	54.41	56.54
Bra002625.1-P	Field mustard	mitochondrion	54.41	56.54
CDX80341	Canola	mitochondrion	54.25	56.27
AT5G58700.3	Thale cress	cytosol	54.25	55.61
CDY32691	Canola	cytosol	53.92	55.56
Bra020359.1-P	Field mustard	cytosol, mitochondrion	53.76	55.39
AT5G58690.1	Thale cress	cytosol	50.82	53.81
Bra005237.1-P	Field mustard	cytosol	12.75	52.35
Bra002626.1-P	Field mustard	cytosol	48.69	51.38
CDY52121	Canola	cytosol	49.02	50.93
CDX80342	Canola	cytosol	48.53	50.42
OQU77319	Sorghum	mitochondrion	49.18	50.0
OQU92774	Sorghum	cytosol	39.54	50.0
CDY33201	Canola	cytosol	10.46	50.0
CDX75008	Canola	cytosol	13.73	48.55
AT3G47220.1	Thale cress	cytosol	36.27	41.81
OQU82766	Sorghum	cytosol	46.24	41.68
AT3G47290.2	Thale cress	cytosol	35.78	38.22

Protein Annotations

KEGG:00562+3.1.4.11	KEGG:04070+3.1.4.11	Gene3D:2.60.40.150	Gene3D:3.20.20.190	MapMan:5.7.2.3.2	UniProt:A0A1Z5RG00
InterPro:C2_dom	InterPro:C2_domain_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0004435	GO:GO:0004871
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006629	GO:GO:0007154	GO:GO:0007165
GO:GO:0008081	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016042
GO:GO:0016787	GO:GO:0035556	InterPro:IPR000008	InterPro:IPR000909	InterPro:IPR001711	InterPro:IPR017946
InterPro:IPR035892	EnsemblPlants:OQU82674	ProteinID:OQU82674	ProteinID:OQU82674.1	PFAM:PF00168	PFAM:PF00387
PFAM:PF00388	InterPro:PI-PLC_fam	InterPro:PLC-like_Pdiesterase_TIM-brl	InterPro:PLipase_C_PInositol-sp_X_dom	InterPro:PLipase_C_Pinositol-sp_Y	PRINTS:PR00390
PFscan:PS50004	PFscan:PS50007	PFscan:PS50008	PANTHER:PTHR10336	PANTHER:PTHR10336:SF107	SMART:SM00148
SMART:SM00149	SMART:SM00239	EnsemblPlantsGene:SORBI_3005G002000	SUPFAM:SSF49562	SUPFAM:SSF51695	UniParc:UPI000B426644
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:145865..150657

Molecular Weight (calculated)

68667.9 Da

IEP (calculated)

7.093

GRAVY (calculated)

-0.469

Length

612 amino acids

Sequence
(BLAST)

001: MGSYKYKYCM CFTRKFRSPD AQPPPDVRAA YLSFASDVHA LRRFLSQAQA EHPADVDRIL ALLTAASVGH GIARLVTRSP APAMPTLDDF FAFLFSPELN
101: PPMGPPHQVH QDMSAPFSHY FVFTGHNSYL TGNQLNSDSS DVPIIKALQR GVRVIELDMW PNSSKTNVDI LHGGTLTAPV EMVRCLKSIK EYAFCASPYP
201: LVITLEDHLT PDLQAKVAKM LTETFGDLLF IPSSDPMKEF PSPAALMKRI IISTKPPQEY KEFLKVKDNQ NGSGNIADLP DTGSLRRIDS NADNQNGSGN
301: LAADTGSLRR IDSNADESDG KDELDEQDEE DSDEDDPKFQ QDTACEYRKL ITIQAGKPKG HLRDALKVDP EKVRRLSLSE TQLAKATTSH GAEVIRFTQN
401: NILRVYPKGT RVNSSNYDPM NAWTHGAQMV AFNMQGHDKA LRLMQGFFRA NGGCGYVKKP DFLLTTGPKG EVFDPKGSLP VKKTLKVKVY MGDGWRMDFS
501: KTHFDAFSPP DFYTRVGIAG AKEDTVMKKT KVIEDQWVPV WDEEFTFPLR VPELALLRIE VQEYDMSEKH DFGGQTCLPV WELKKGIRAV PLHDRKGNRY
601: KSVRLLMRFD FV

Best Arabidopsis Sequence Match ( AT2G40116.1 )
(BLAST)

001: MGKEKKTESY NNDSGSYNYR MFKFYNRKFK INEVTPTDDV RDAFCQFAVG GGGGGTDGDS SDGDGSTGVM GAEQLCSFLD DHGESTTVAE AQRLIDEVIR
101: RRHHVTRFTR HGLDLDDFFN FLFYDDLNPP ITPHVHQDMT APLSHYFIYT GHNSYLTGNQ LSSDCSEVPV IKALQRGVRV IELDLWPNST GTDINVLHGR
201: TLTTPVPLMK CLKSIRDYAF SSSPYPVIIT LEDHLTPDLQ AKVAEMATQI FGQMLYYPES DSLLEFPSPA SLLHRIIIST KPPKEYLESR NPIVKQKDNN
301: VSPSSEDETP RTEEIQTLES MLFDQDFESK SDSDQEDEEA SEDQKPAYKR LITIHAGKPK GTVKEEMKVV VDKVRRLSLS EQELDRTCSS NSQDVVRFTQ
401: RNLLRIYPKG TRFNSSNYKP LIGWTHGAQM IAFNMQGYGK SLWLMHGMFR ANGGCGYVKK PNFLMKKGFH DEVFDPRKKL PVKETLKVKV YMGDGWRMDF
501: SHTHFDAYSP PDFYTKMFIV GVPADNAKKK TKIIEDNWYP IWDEEFSFPL TVPELALLRI EVREYDMSEK DDFGGQTCLP VAELRPGIRS VPLYDKKGEK
601: MKSVRLLMRF IFE

Arabidopsis Description

PLC6Phosphoinositide phospholipase C 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8GV43]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.