CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028746_P001	Maize	plastid	86.16	70.8
TraesCS4B01G195200.2	Wheat	cytosol	78.72	60.19
TraesCS4D01G195800.1	Wheat	cytosol	78.31	59.87
TraesCS4A01G109000.2	Wheat	cytosol	78.1	59.72
Os03t0289300-00	Rice	plasma membrane	76.86	58.22
HORVU4Hr1G056550.2	Barley	cytosol	73.76	56.04
EER99967	Sorghum	cytosol, mitochondrion	64.46	51.4
GSMUA_Achr5P28270_001	Banana	plasma membrane	58.68	47.81
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	58.47	47.72
GSMUA_Achr2P18980_001	Banana	mitochondrion	57.44	47.44
VIT_06s0004g06660.t01	Wine grape	cytosol, mitochondrion	55.58	45.75
Solyc06g007120.2.1	Tomato	nucleus	52.89	43.61
VIT_06s0004g06650.t01	Wine grape	cytosol	42.56	42.13
CDY71544	Canola	cytosol	41.53	41.27
AT5G58700.3	Thale cress	cytosol	50.21	40.7
Bra002625.1-P	Field mustard	mitochondrion	48.97	40.24
CDY52122	Canola	cytosol, mitochondrion	48.97	40.24
CDY32691	Canola	cytosol	49.38	40.24
EES16479	Sorghum	cytosol, mitochondrion	50.62	40.16
Bra020359.1-P	Field mustard	cytosol, mitochondrion	49.17	40.07
CDX80341	Canola	mitochondrion	48.35	39.66
OQU82674	Sorghum	cytosol, mitochondrion	50.0	39.54
OQU77319	Sorghum	mitochondrion	47.52	38.21
AT5G58690.1	Thale cress	cytosol	44.63	37.37
Bra002626.1-P	Field mustard	cytosol	44.01	36.72
CDY52121	Canola	cytosol	44.42	36.5
CDX80342	Canola	cytosol	44.42	36.5
OQU82766	Sorghum	cytosol	48.76	34.76
AT3G47220.1	Thale cress	cytosol	32.23	29.38
AT3G47290.2	Thale cress	cytosol	31.82	26.88
CDX75008	Canola	cytosol	4.75	13.29
CDY33201	Canola	cytosol	3.51	13.28
Bra005237.1-P	Field mustard	cytosol	3.93	12.75

Protein Annotations

KEGG:00562+3.1.4.11	KEGG:04070+3.1.4.11	Gene3D:2.60.40.150	Gene3D:3.20.20.190	MapMan:5.7.2.3.2	UniProt:A0A1Z5SA06
InterPro:C2_dom	InterPro:C2_domain_sf	InterPro:EF-hand-dom_pair	GO:GO:0003674	GO:GO:0003824	GO:GO:0004435
GO:GO:0004871	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006629	GO:GO:0007154
GO:GO:0007165	GO:GO:0008081	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016042	GO:GO:0016787	GO:GO:0035556	InterPro:IPR000008	InterPro:IPR000909	InterPro:IPR017946
InterPro:IPR035892	EnsemblPlants:OQU92774	ProteinID:OQU92774	ProteinID:OQU92774.1	PFAM:PF00168	PFAM:PF00388
InterPro:PI-PLC_fam	InterPro:PI-PLC_plant	InterPro:PLC-like_Pdiesterase_TIM-brl	InterPro:PLipase_C_PInositol-sp_X_dom	PRINTS:PR00390	PFscan:PS50004
PFscan:PS50007	PANTHER:PTHR10336	PANTHER:PTHR10336:SF109	SMART:SM00148	SMART:SM00239	EnsemblPlantsGene:SORBI_3001G408001
SUPFAM:SSF47473	SUPFAM:SSF49562	SUPFAM:SSF51695	UniParc:UPI000B8B9FE1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:69205608..69209080

Molecular Weight (calculated)

54072.3 Da

IEP (calculated)

5.129

GRAVY (calculated)

-0.402

Length

484 amino acids

Sequence
(BLAST)

001: MPKRDKAASP RASPPHTPPP GTDSEAEEAD QAGASAAEMG TYKCCIFFTR RFALADTSTP EDVRALFSRY AGGSPYMLAD DLRRYLAAWG GADGEVPEQI
101: IDRILQDRSR TPRFGRPALT VDDFLHFLFS EDLNPPLRHS KVNQDMNAPL SHYFIYTGHN SYLTGNQLSS DCSDVPIIKA LQIGVRVIEL DIWPNSSKDD
201: IDVLHGRTLT APVSLIKCLR SIKEYAFVAS PYPVIITLED HLTPDLQAKV AKMVLEVFGD ILYYPESKHL QEFPSPEALK GRVMLSTKPP KEYLEAKGGT
301: MKEREIEAQF KKGEREEAAW GVEVPDIHEE MQVANRNDDD LLYRERGADG DDEKKTKHVA AEYKHLITIK AGKPKGPLVD ALKNDPDKVG IAGVPLDSVM
401: RKTKAVEDSW VPVWEEEFTF PLTVPEIAVL RVEVHEQDVS EDDFGGQTAL PVAELRPGIR AVPLFDHKGL KFRSVKLLMC FEFA

Best Arabidopsis Sequence Match ( AT2G40116.1 )
(BLAST)

001: MGKEKKTESY NNDSGSYNYR MFKFYNRKFK INEVTPTDDV RDAFCQFAVG GGGGGTDGDS SDGDGSTGVM GAEQLCSFLD DHGESTTVAE AQRLIDEVIR
101: RRHHVTRFTR HGLDLDDFFN FLFYDDLNPP ITPHVHQDMT APLSHYFIYT GHNSYLTGNQ LSSDCSEVPV IKALQRGVRV IELDLWPNST GTDINVLHGR
201: TLTTPVPLMK CLKSIRDYAF SSSPYPVIIT LEDHLTPDLQ AKVAEMATQI FGQMLYYPES DSLLEFPSPA SLLHRIIIST KPPKEYLESR NPIVKQKDNN
301: VSPSSEDETP RTEEIQTLES MLFDQDFESK SDSDQEDEEA SEDQKPAYKR LITIHAGKPK GTVKEEMKVV VDKVRRLSLS EQELDRTCSS NSQDVVRFTQ
401: RNLLRIYPKG TRFNSSNYKP LIGWTHGAQM IAFNMQGYGK SLWLMHGMFR ANGGCGYVKK PNFLMKKGFH DEVFDPRKKL PVKETLKVKV YMGDGWRMDF
501: SHTHFDAYSP PDFYTKMFIV GVPADNAKKK TKIIEDNWYP IWDEEFSFPL TVPELALLRI EVREYDMSEK DDFGGQTCLP VAELRPGIRS VPLYDKKGEK
601: MKSVRLLMRF IFE

Arabidopsis Description

PLC6Phosphoinositide phospholipase C 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8GV43]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.