CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020446_P001	Maize	nucleus	85.11	87.06
EES13897	Sorghum	nucleus	55.34	58.07
EES07261	Sorghum	nucleus	49.38	51.29
CDY65270	Canola	nucleus	40.45	41.27
Bra016294.1-P	Field mustard	nucleus	41.69	40.78
CDY46433	Canola	nucleus	41.44	40.53
Bra024677.1-P	Field mustard	nucleus	41.44	40.14
AT1G26870.1	Thale cress	nucleus	41.19	39.71
CDY01755	Canola	nucleus	36.23	36.78
CDX95910	Canola	nucleus	35.98	35.45
Bra004403.1-P	Field mustard	nucleus	35.48	35.31
EES17466	Sorghum	nucleus	25.06	33.22
EER93360	Sorghum	nucleus	30.27	32.97
EER95852	Sorghum	nucleus	26.3	30.9
EER92917	Sorghum	nucleus	24.81	30.58
EES03797	Sorghum	nucleus	23.33	29.75
KXG33829	Sorghum	nucleus	20.84	28.87
EES13251	Sorghum	mitochondrion, nucleus	26.55	28.61
EER96087	Sorghum	nucleus	20.35	28.28
EER93215	Sorghum	nucleus	21.59	27.27
EES19541	Sorghum	nucleus	26.3	25.3
KXG22031	Sorghum	nucleus	21.34	25.22
KXG32136	Sorghum	plastid	23.57	25.0
EER92326	Sorghum	nucleus	23.08	24.47
EES01882	Sorghum	nucleus	26.55	24.21
EER99924	Sorghum	cytosol, nucleus, plastid	23.08	23.97
EER99985	Sorghum	nucleus	20.6	23.45
KXG20943	Sorghum	nucleus, plastid	21.59	22.54
EES07907	Sorghum	plastid	22.33	22.39
OQU90111	Sorghum	nucleus	23.08	22.25
OQU83033	Sorghum	nucleus	20.6	21.61
EES16571	Sorghum	nucleus	22.08	20.75

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	UniProt:A0A1W0W562	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003441	InterPro:IPR036093	InterPro:NAC-dom	InterPro:NAC_dom_sf	EnsemblPlants:OQU89481	ProteinID:OQU89481
ProteinID:OQU89481.1	PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR44574	PANTHER:PTHR44574:SF2	EnsemblPlantsGene:SORBI_3002G200300
SUPFAM:SSF101941	UniParc:UPI0009DC84CF	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:59005308..59007308

Molecular Weight (calculated)

45042.8 Da

IEP (calculated)

7.937

GRAVY (calculated)

-0.661

Length

403 amino acids

Sequence
(BLAST)

001: MDERADMDKS DEVLLPGFRF HPTDEELISF YLKRKIQQKP VSIELIRQLD IYKYDPWDLP KLASTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT
101: DRPVYSSEGT KCIGLKKSLV FYKGRAARGI KTDWMMHEYR LPSLNDPSRP KTPKDKNIPA NDAWAICRIF KKPNSVAQRV LSHSWGPQSI TTTEPELLSA
201: LQSIQASHFA LESSTCSANR FNSQQCLQEN LNNSQDGSPC KVITFNRSLS LPSEKDIHSS YVSKKDIHSS SVILPLEIQS QQKSSDATSV LLSMAPGILN
301: SMNEAIPNTE FGLLEPSNGY IVDWATDSSG GIGNSDGDTY TRKSGNGYSS GNECGIPRKI KFPFNLGVGS PDDWTSNMPC DSLPCSPHPA EMSNSNSTEK
401: YYA

Best Arabidopsis Sequence Match ( AT1G26870.1 )
(BLAST)

001: MGDRNNDGDQ KMEDVLLPGF RFHPTDEELV SFYLKRKVQH NPLSIELIRQ LDIYKYDPWD LPKFAMTGEK EWYFYCPRDR KYRNSSRPNR VTGAGFWKAT
101: GTDRPIYSSE GNKCIGLKKS LVFYKGRAAK GVKTDWMMHE FRLPSLSEPS PPSKRFFDSP VSPNDSWAIC RIFKKTNTTT LRALSHSFVS SLPPETSTDT
201: MSNQKQSNTY HFSSDKILKP SSHFQFHHEN MNTPKTSNST TPSVPTISPF SYLDFTSYDK PTNVFNPVSC LDQQYLTNLF LATQETQPQF PRLPSSNEIP
301: SFLLNTSSDS TFLGEFTSHI DLSAVLAQEQ CPPLVSLPQE YQETGFEGNG IMKNMRGSNE DHLGDHCDTL RFDDFTSTIN ENHRHHQDLK QNMTLLESYY
401: SSLSSINSDL PACFSSTT

Arabidopsis Description

FEZProtein FEZ [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVH0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.