Factsheet for PGSC0003DMT400042008

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 10
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g053600.2.1	Tomato	plastid	97.5	97.26
VIT_05s0049g01130.t01	Wine grape	plastid	81.5	77.99
KRH69116	Soybean	plastid	79.25	75.3
Os03t0611200-01	Rice	plastid	73.5	72.59
TraesCS4D01G078200.1	Wheat	plastid	73.25	72.35
TraesCS4A01G235500.1	Wheat	plastid	73.0	72.1
GSMUA_Achr4P04780_001	Banana	plastid	76.0	71.87
TraesCS4B01G079400.1	Wheat	plastid	72.75	71.85
AT1G04420.1	Thale cress	plastid	73.5	71.36
EER93819	Sorghum	plastid	71.25	71.07
CDY18231	Canola	cytosol	71.25	69.01
Bra015315.1-P	Field mustard	cytosol	71.0	67.62
TraesCS4A01G235300.1	Wheat	plastid	66.5	66.5
OQU91377	Sorghum	plastid	67.25	66.42
TraesCS4D01G078600.1	Wheat	plastid	67.75	65.46
TraesCS4B01G079600.1	Wheat	mitochondrion	51.25	65.08
CDX89825	Canola	plastid	72.75	63.54
HORVU4Hr1G013530.5	Barley	mitochondrion	73.5	60.62
Zm00001d033338_P002	Maize	plastid	70.5	59.87
HORVU4Hr1G013600.1	Barley	mitochondrion	28.5	56.72
Zm00001d043151_P001	Maize	plastid	23.0	45.1
PGSC0003DMT400043415	Potato	endoplasmic reticulum, extracellular	40.25	44.85
PGSC0003DMT400016479	Potato	cytosol	5.25	33.87
PGSC0003DMT400043456	Potato	cytosol, mitochondrion	25.0	30.3
PGSC0003DMT400016819	Potato	cytosol	14.5	29.29
PGSC0003DMT400016484	Potato	cytosol	24.5	28.16
PGSC0003DMT400016488	Potato	mitochondrion	16.25	26.97
PGSC0003DMT400006010	Potato	cytosol	23.0	26.67
PGSC0003DMT400041157	Potato	plastid	19.75	21.53
PGSC0003DMT400047623	Potato	plastid	18.75	20.27
PGSC0003DMT400016815	Potato	extracellular	6.25	20.16
PGSC0003DMT400042838	Potato	cytosol	16.5	14.7

Protein Annotations

EntrezGene:102595552	Gene3D:3.20.20.100	MapMan:35.1	InterPro:Aldo/keto_reductase	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:IPR036812	UniProt:M1BCC6
InterPro:NADP_OxRdtase_dom	InterPro:NADP_OxRdtase_dom_sf	PFAM:PF00248	EnsemblPlantsGene:PGSC0003DMG400016293	PGSC:PGSC0003DMG400016293	EnsemblPlants:PGSC0003DMT400042008
PRINTS:PR00069	PANTHER:PTHR43364	PANTHER:PTHR43364:SF4	SUPFAM:SSF51430	UniParc:UPI000296DBC8	RefSeq:XP_006350690.1

Description

Oxidoreductase [Source:PGSC_GENE;Acc:PGSC0003DMG400016293]

Coordinates

chr6:-:39539988..39556247

Molecular Weight (calculated)

45416.3 Da

IEP (calculated)

8.093

GRAVY (calculated)

-0.411

Length

400 amino acids

Sequence
(BLAST)

001: MASCSTFTPG IPSCRNFMRT LRPSSPSWRK SRVVTAKLAQ KNAMQYRKLG DSDLNISEIT IGTMTFGEQN TEKEAHEILS YAFDQGINII DTAEAYPVPM
101: RKETQGTTDL YISSWMKSQP RDKVILATKV CGYSERSSYI RENAKVLRVD AANIRESVEK SLKRLNTDYI DLLQIHWPDR YVPLFGEFFY ETSKWRPSVP
201: FVEQLRAFQE LIDEGKVRYI GVSNETSYGV MEFVHAAKVE GLPKIVSIQN SYSLLVRCHF EVDLVEVCHP NNCNIGLLSY SPLAGGTLSG KYLDNNSEAA
301: KKGRLNLFPG YMERYNKSLA KEATKKYEEV AKKHGLTLVE LALGFARDRP FMTSSIIGAT SVDQLKEDID AFLTTERPLP PQVMDDIEDI FKRYRDPASR

Best Arabidopsis Sequence Match ( AT1G04420.1 )
(BLAST)

001: MASSYVTYST VTPVVSSSNI RGVFRLAFTR RRVTLSPNAR RRILRVSAKA STKNAMEYRK LGDSDLNISE VTMGTMTFGE QNTEKESHEM LSYAIEEGIN
101: CIDTAEAYPI PMKKETQGKT DLYISSWLKS QQRDKIVLAT KVCGYSERSA YIRDSGEILR VDAANIKESV EKSLKRLGTD YIDLLQIHWP DRYVPLFGDF
201: YYETSKWRPS VPFAEQLRAF QDLIVEGKVR YIGVSNETSY GVTEFVNTAK LEGLPKIVSI QNGYSLLVRC RYEVDLVEVC HPKNCNVGLL AYSPLGGGSL
301: SGKYLATDQE ATKNARLNLF PGYMERYKGS LAKEATIQYV EVAKKYGLTP VELALGFVRD RPFVTSTIIG ATSVKQLKED IDAFLMTERP FSQEVMADID
401: AVFKRFKDPS FV

Arabidopsis Description

NAD(P)-linked oxidoreductase superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ23]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.