Factsheet for Solyc06g053600.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042008	Potato	cytosol, plastid	97.26	97.5
VIT_05s0049g01130.t01	Wine grape	plastid	81.3	77.99
KRH69116	Soybean	plastid	78.3	74.58
Os03t0611200-01	Rice	plastid	72.82	72.1
TraesCS4D01G078200.1	Wheat	plastid	72.57	71.85
TraesCS4A01G235500.1	Wheat	plastid	72.32	71.6
TraesCS4B01G079400.1	Wheat	plastid	72.07	71.36
GSMUA_Achr4P04780_001	Banana	plastid	75.06	71.16
AT1G04420.1	Thale cress	plastid	72.82	70.87
EER93819	Sorghum	plastid	70.57	70.57
CDY18231	Canola	cytosol	70.57	68.52
Bra015315.1-P	Field mustard	cytosol	70.32	67.14
TraesCS4A01G235300.1	Wheat	plastid	65.84	66.0
OQU91377	Sorghum	plastid	66.58	65.93
TraesCS4D01G078600.1	Wheat	plastid	67.33	65.22
TraesCS4B01G079600.1	Wheat	mitochondrion	50.62	64.44
CDX89825	Canola	plastid	72.32	63.32
HORVU4Hr1G013530.5	Barley	mitochondrion	72.82	60.21
Zm00001d033338_P002	Maize	plastid	69.83	59.45
HORVU4Hr1G013600.1	Barley	mitochondrion	28.43	56.72
Solyc09g074310.2.1	Tomato	endoplasmic reticulum, extracellular	40.15	44.85
Zm00001d043151_P001	Maize	plastid	22.69	44.61
Solyc12g098150.1.1	Tomato	plastid	24.94	30.3
Solyc09g082730.2.1	Tomato	cytosol	24.94	28.9
Solyc09g082720.2.1	Tomato	cytosol, plastid	24.44	28.41
Solyc09g098090.2.1	Tomato	cytosol	23.19	26.96
Solyc09g097970.2.1	Tomato	cytosol, extracellular	22.94	26.59
Solyc09g097960.2.1	Tomato	cytosol	22.94	26.59
Solyc09g097980.2.1	Tomato	cytosol, extracellular	23.19	26.5
Solyc01g097390.2.1	Tomato	plastid	22.69	26.45
Solyc01g097380.1.1	Tomato	plastid	21.95	26.43
Solyc09g098000.2.1	Tomato	cytosol	22.94	26.36
Solyc01g065490.2.1	Tomato	cytosol	19.95	25.08
Solyc07g043570.2.1	Tomato	plastid	19.45	21.97
Solyc03g082560.2.1	Tomato	nucleus	17.96	19.46
Solyc09g097950.1.1	Tomato	cytosol	5.74	15.44

Protein Annotations

EnsemblPlants:Solyc06g053600.2.1	EnsemblPlantsGene:Solyc06g053600.2	Gene3D:3.20.20.100	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:Aldo/keto_reductase	InterPro:IPR036812	InterPro:NADP_OxRdtase_dom
InterPro:NADP_OxRdtase_dom_sf	PANTHER:PTHR43364	PANTHER:PTHR43364:SF4	PFAM:PF00248	PRINTS:PR00069	SUPFAM:SSF51430
UniParc:UPI0002765751	UniProt:K4C647	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr6:-:36407610..36420073

Molecular Weight (calculated)

45403.1 Da

IEP (calculated)

7.828

GRAVY (calculated)

-0.402

Length

401 amino acids

Sequence
(BLAST)

001: MASCNTFTPG GIPSCRNFTR TFRSSSPTWR KSGVVTAKLA QKNAMQYRKL GDSDLNISEI TIGTMTFGEQ NTEKEAHEIL SYAFDQGINI IDTAEAYPVP
101: MRKETQGATD LYISSWMKSQ PRDKVILATK VCGYSERSSY IRENAKVLRV DAANIRESVE KSLKRLNTDY IDLLQIHWPD RYVPLFGEFF YETSKWRPSV
201: PFVEQLRAFQ ELIDEGKVRY IGVSNETSYG VMEFVHAAKV EGLPKIVSIQ NSYSLLVRCH FEVDLVEVCH PNNCNIGLLS YSPLAGGTLS GKYLDSNSEA
301: ARKGRLHLFP GYMERYNKSL AKEATKKYEE VAKKHGLTLV ELALGFARDR PFMTSSIIGA TSVDQLKEDI DAFLTTERPL PPQVMDDIED IFKRYRDPAS
401: R

Best Arabidopsis Sequence Match ( AT1G04420.1 )
(BLAST)

001: MASSYVTYST VTPVVSSSNI RGVFRLAFTR RRVTLSPNAR RRILRVSAKA STKNAMEYRK LGDSDLNISE VTMGTMTFGE QNTEKESHEM LSYAIEEGIN
101: CIDTAEAYPI PMKKETQGKT DLYISSWLKS QQRDKIVLAT KVCGYSERSA YIRDSGEILR VDAANIKESV EKSLKRLGTD YIDLLQIHWP DRYVPLFGDF
201: YYETSKWRPS VPFAEQLRAF QDLIVEGKVR YIGVSNETSY GVTEFVNTAK LEGLPKIVSI QNGYSLLVRC RYEVDLVEVC HPKNCNVGLL AYSPLGGGSL
301: SGKYLATDQE ATKNARLNLF PGYMERYKGS LAKEATIQYV EVAKKYGLTP VELALGFVRD RPFVTSTIIG ATSVKQLKED IDAFLMTERP FSQEVMADID
401: AVFKRFKDPS FV

Arabidopsis Description

NAD(P)-linked oxidoreductase superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ23]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.