Factsheet for Solyc12g098150.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
plasma membrane 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

plastid: 22908117
plastid: 26371478
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400043456	Potato	cytosol, mitochondrion	99.7	99.7
VIT_05s0051g00650.t01	Wine grape	mitochondrion	92.12	92.68
KRG90245	Soybean	nucleus	90.61	91.16
KRH33472	Soybean	nucleus	90.61	91.16
CDY15518	Canola	mitochondrion	86.67	87.2
Bra030584.1-P	Field mustard	mitochondrion	86.36	86.89
CDX86614	Canola	mitochondrion	86.36	86.89
CDY18250	Canola	cytosol	86.36	86.89
Bra015342.1-P	Field mustard	cytosol	86.06	86.59
AT1G04690.1	Thale cress	cytosol	86.06	86.59
CDX89797	Canola	cytosol, mitochondrion, plastid	86.06	86.59
GSMUA_Achr9P23530_001	Banana	mitochondrion	78.79	85.81
Os02t0817500-01	Rice	mitochondrion	84.85	85.37
Zm00001d018485_P002	Maize	mitochondrion	84.55	85.06
GSMUA_Achr3P27400_001	Banana	mitochondrion	77.88	84.82
EES06018	Sorghum	mitochondrion	84.24	84.76
TraesCS6D01G378400.1	Wheat	plastid	84.24	84.76
HORVU6Hr1G091250.1	Barley	mitochondrion	83.94	84.45
TraesCS6B01G432900.1	Wheat	mitochondrion	83.33	83.84
Zm00001d051912_P001	Maize	mitochondrion	83.03	83.28
TraesCS6A01G392700.1	Wheat	golgi	83.64	72.82
CDY18564	Canola	extracellular, plasma membrane	35.15	31.96
Solyc09g074310.2.1	Tomato	endoplasmic reticulum, extracellular	31.82	29.25
Solyc09g082730.2.1	Tomato	cytosol	26.67	25.43
Solyc09g097970.2.1	Tomato	cytosol, extracellular	26.67	25.43
Solyc09g098090.2.1	Tomato	cytosol	26.36	25.22
Solyc09g097960.2.1	Tomato	cytosol	26.36	25.14
Solyc01g065490.2.1	Tomato	cytosol	24.24	25.08
Solyc09g097980.2.1	Tomato	cytosol, extracellular	26.67	25.07
Solyc06g053600.2.1	Tomato	plastid	30.3	24.94
Solyc09g082720.2.1	Tomato	cytosol, plastid	25.76	24.64
Solyc01g097390.2.1	Tomato	plastid	25.15	24.13
Solyc09g098000.2.1	Tomato	cytosol	25.15	23.78
Solyc01g097380.1.1	Tomato	plastid	23.94	23.72
Solyc07g043570.2.1	Tomato	plastid	23.94	22.25
Solyc03g082560.2.1	Tomato	nucleus	24.24	21.62
Solyc09g097950.1.1	Tomato	cytosol	7.58	16.78
Bra017398.1-P	Field mustard	extracellular	5.15	12.88

Protein Annotations

EnsemblPlants:Solyc12g098150.1.1	EnsemblPlantsGene:Solyc12g098150.1	Gene3D:3.20.20.100	InterPro:IPR036812	InterPro:K_chnl_volt-dep_bsu_KCNAB-rel	InterPro:NADP_OxRdtase_dom
InterPro:NADP_OxRdtase_dom_sf	PANTHER:PTHR43150	PFAM:PF00248	PRINTS:PR01577	SUPFAM:SSF51430	UniParc:UPI000276A05E
UniProt:K4DHI9	MapMan:35.1	:	:	:	:

Description

Probable voltage-gated potassium channel subunit beta [Source:Projected from Arabidopsis thaliana (AT1G04690) UniProtKB/Swiss-Prot;Acc:O23016]

Coordinates

chr12:+:65769199..65773438

Molecular Weight (calculated)

36958.2 Da

IEP (calculated)

7.928

GRAVY (calculated)

-0.326

Length

330 amino acids

Sequence
(BLAST)

001: MQMQYKNLGR SGLKVSQLSY GAWVTFGNQL DVKEAKTLLQ CCRDHGVNFF DNAEVYANGR AEEIMGQAIR ELGWKRSDIV VSTKIFWGGS GPNDKGLSRK
101: HIIEGTKASL KRLDMDYVDL IYCHRPDTST PIEETVRAMN YVIDKGWAFY WGTSEWSAQQ ITEAWGVAQR LDLVGPIVEQ PEYNLLSRHK VESEYLPLYS
201: NYGIGLTTWS PLASGVLTGK YTSGNIPPDS RFALENYKNL ASRSLVDDVL RKVNGLKPIA EELGVPLPQL AIAWCAANPN VSSVITGATK EYQIQENMKA
301: INVIPMLTPA VMEKIEAIVQ SKPKRQDSYR

Best Arabidopsis Sequence Match ( AT1G04690.1 )
(BLAST)

001: MQYKNLGKSG LKVSTLSFGA WVTFGNQLDV KEAKSILQCC RDHGVNFFDN AEVYANGRAE EIMGQAIREL GWRRSDIVIS TKIFWGGPGP NDKGLSRKHI
101: VEGTKASLKR LDMDYVDVLY CHRPDASTPI EETVRAMNYV IDKGWAFYWG TSEWSAQQIT EAWGAADRLD LVGPIVEQPE YNMFARHKVE TEFLPLYTNH
201: GIGLTTWSPL ASGVLTGKYN KGAIPSDSRF ALENYKNLAN RSLVDDVLRK VSGLKPIADE LGVTLAQLAI AWCASNPNVS SVITGATRES QIQENMKAVD
301: VIPLLTPIVL DKIEQVIQSK PKRPESYR

Arabidopsis Description

KAB1Probable voltage-gated potassium channel subunit beta [Source:UniProtKB/Swiss-Prot;Acc:O23016]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.