Factsheet for Solyc03g082560.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 8
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047623	Potato	plastid	97.03	97.03
VIT_16s0098g01180.t01	Wine grape	cytosol, nucleus, peroxisome	75.95	86.73
KRH53587	Soybean	plastid	76.22	78.12
AT5G53580.1	Thale cress	plastid	72.97	73.97
Bra003045.1-P	Field mustard	plastid	72.16	73.96
CDY14368	Canola	plastid	72.16	73.96
CDY20245	Canola	plastid	71.89	73.48
GSMUA_Achr3P18270_001	Banana	plastid	73.51	71.96
TraesCS1D01G184400.1	Wheat	plastid	72.43	71.47
TraesCS1B01G199700.1	Wheat	plastid	72.16	71.2
Os10t0517400-01	Rice	plasma membrane	71.62	70.67
EER93936	Sorghum	plastid	70.81	70.62
TraesCS1A01G180800.1	Wheat	plastid	71.35	70.4
HORVU1Hr1G047820.1	Barley	cytosol, peroxisome, plastid	70.81	61.94
Solyc07g043570.2.1	Tomato	plastid	36.76	38.31
Solyc09g097960.2.1	Tomato	cytosol	24.32	26.01
Solyc09g097970.2.1	Tomato	cytosol, extracellular	24.05	25.72
Solyc09g098000.2.1	Tomato	cytosol	24.05	25.5
Solyc09g082720.2.1	Tomato	cytosol, plastid	23.51	25.22
Solyc09g097980.2.1	Tomato	cytosol, extracellular	23.51	24.79
Solyc12g098150.1.1	Tomato	plastid	21.62	24.24
Solyc09g082730.2.1	Tomato	cytosol	22.16	23.7
Solyc01g097390.2.1	Tomato	plastid	21.89	23.55
Solyc09g098090.2.1	Tomato	cytosol	21.89	23.48
Solyc09g074310.2.1	Tomato	endoplasmic reticulum, extracellular	22.7	23.4
Solyc01g097380.1.1	Tomato	plastid	20.81	23.12
Solyc01g065490.2.1	Tomato	cytosol	18.92	21.94
Solyc06g053600.2.1	Tomato	plastid	19.46	17.96
Solyc09g097950.1.1	Tomato	cytosol	7.03	17.45

Protein Annotations

Gene3D:3.20.20.100	MapMan:35.1	InterPro:Aldo/ket_reductase_CS	InterPro:Aldo/keto_reductase	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:IPR036812	UniProt:K4BI32
InterPro:NADP_OxRdtase_dom	InterPro:NADP_OxRdtase_dom_sf	PFAM:PF00248	PRINTS:PR00069	ScanProsite:PS00062	PANTHER:PTHR43625
PANTHER:PTHR43625:SF5	SUPFAM:SSF51430	EnsemblPlantsGene:Solyc03g082560.2	EnsemblPlants:Solyc03g082560.2.1	UniParc:UPI0002768570	SEG:seg

Description

No Description!

Coordinates

chr3:+:52495520..52498427

Molecular Weight (calculated)

41186.1 Da

IEP (calculated)

9.569

GRAVY (calculated)

-0.159

Length

370 amino acids

Sequence
(BLAST)

001: MALCLSASKS IAFNIRCSNS TSDPLPSSSV FKSLRIPRFW PWQKVKMGPL TVSPMGFGTW AWGNQLLWGY QDSMDSELQQ TFNLAVENGI NLFDTADSYG
101: TGKLNGQSEK LLGKFIREFP GDKQVKNDIV IATKFAAYPW RLTPGQFVNA CKSSLERMEI EQIGIGQLHW STANYAPLQE RALWDGLVAM YEKGLVRAVG
201: VSNYGPKQLL KIYKYLDDRG VPLRSAQVQF SLLSMGSDQM EIKNICDSLG IRVIAYSPLG LGMLTGKYTP SNLPPGPRGL LFRQILPGLE PLLTSLREIA
301: QRRRKTVPQV AINWCICKGT IPIPGIKSVK QTEENLGALG WQLSSDELLQ LEFAALDSPQ KMIQNVFQTK

Best Arabidopsis Sequence Match ( AT5G53580.1 )
(BLAST)

001: MALTLSTTKT FTNINCSNNT SNITTFKPLK LPLFWPWQKV KMGPLSVSPM GFGTWAWGNQ LLWGYQTSMD DQLQQAFELA LENGINLFDT ADSYGTGRLN
101: GQSERLLGKF IKESQGLKGK QNEVVVATKF AAYPWRLTSG QFVNACRASL DRLQIDQLGI GQLHWSTASY APLQELVLWD GLVQMYEKGL VRAVGVSNYG
201: PQQLVKIHDY LKTRGVPLCS AQVQFSLLSM GKEQLEIKSI CDELGIRLIS YSPLGLGMLT GKYSSSKLPT GPRSLLFRQI LPGLEPLLLA LSEIAKKRGK
301: TMPQVAINWC ICKGTVPIPG IKSVRHVEDN LGALGWKLTN DEQLQLEYAA KESPKSMIQN IFQTR

Arabidopsis Description

PLR1Pyridoxal reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q56Y42]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.