Factsheet for PGSC0003DMT400061586

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g006980.1.1	Tomato	extracellular	98.11	98.11
KRG90715	Soybean	nucleus	70.28	71.29
KRH36030	Soybean	extracellular	59.91	68.65
EES06908	Sorghum	extracellular, vacuole	53.3	47.88
Os02t0532500-01	Rice	extracellular	51.42	47.6
Zm00001d016697_P001	Maize	extracellular	52.36	47.44
HORVU6Hr1G005420.1	Barley	extracellular	49.53	46.05
TraesCS6D01G033100.1	Wheat	golgi	49.53	46.05
TraesCS6A01G028700.1	Wheat	extracellular, unclear	49.53	46.05
TraesCS6B01G041100.1	Wheat	extracellular	49.06	45.61
PGSC0003DMT400063164	Potato	vacuole	39.62	38.18
PGSC0003DMT400063166	Potato	vacuole	38.68	37.79
PGSC0003DMT400047067	Potato	cytosol	37.26	37.44
PGSC0003DMT400047065	Potato	cytosol, extracellular	36.79	37.14
PGSC0003DMT400033858	Potato	extracellular	35.85	36.02
PGSC0003DMT400030317	Potato	extracellular	34.43	35.1
PGSC0003DMT400036428	Potato	extracellular	33.49	34.13
PGSC0003DMT400058298	Potato	extracellular, vacuole	31.6	31.75

Protein Annotations

EntrezGene:102605702	Gene3D:2.60.120.10	MapMan:35.1	InterPro:Cupin_1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005576	GO:GO:0030145	GO:GO:0045735	GO:GO:0046872	InterPro:Germin
InterPro:IPR014710	UniProt:M1C7R5	PFAM:PF00190	EnsemblPlantsGene:PGSC0003DMG402023974	PGSC:PGSC0003DMG402023974	EnsemblPlants:PGSC0003DMT400061586
PRINTS:PR00325	PANTHER:PTHR31238	PANTHER:PTHR31238:SF8	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	SMART:SM00835
SUPFAM:SSF51182	SignalP:SignalP-noTM	UniParc:UPI000296E515	RefSeq:XP_006361472.2	:	:

Description

Germin 18 [Source:PGSC_GENE;Acc:PGSC0003DMG402023974]

Coordinates

chr11:-:5332901..5334008

Molecular Weight (calculated)

23302.2 Da

IEP (calculated)

6.944

GRAVY (calculated)

0.163

Length

212 amino acids

Sequence
(BLAST)

001: MIPSQMIVFL VIFLQSYISL AYDPDPVNDY CIPRTEFSSI FLSCKNTSLV TVDDFIYSGI KDPGNFKHTG FSSIPVSSTV FPGLNTLGMS FVRADFDVDG
101: VNVPHFHPRA TETAFVLEGK IYSGFVDSGN RVFAKVLEKG EVMVFPKGLV HFQMNVGDSP ATILGSFNSQ NPGLVKIPSA VFGTGIKEEL LMKAFGLNDK
201: EIAKLRKKFV PQ

Best Arabidopsis Sequence Match ( AT3G10080.2 )
(BLAST)

001: MYRPNHSHNQ NHISKRGFSF GTKTHTLISQ TKFWLIKSNH LNQSLIYPHQ IYICLFKPDV TQLFFTWTSS KMEANTLFLL KALCLLCFNV CFTLASDPDP
101: IQDFCIPKPV TSPYHDHHFS TNLPCKNSSE VTTEDFVFSG LKTAGNFTET GFATVPVGPE NFPGLNTLGI SFVRADLKPG SINPPHYHPR ATEVAHLVKG
201: RVYSGFVDSN NKVYAKVMEE GEMMVYPKGL VHFQMNVGDV TATIVGGLNS QNPGIQKIPS VVFGSGINEE LLMKAFGLSL KQIGTLKKRF DPVMSNEH

Arabidopsis Description

RmlC-like cupins superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSI8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.