Factsheet for TraesCS6A01G028700.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, unclear
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G033100.1	Wheat	golgi	96.05	96.05
TraesCS6B01G041100.1	Wheat	extracellular	95.18	95.18
HORVU6Hr1G005420.1	Barley	extracellular	93.86	93.86
Os02t0532500-01	Rice	extracellular	86.84	86.46
Zm00001d016697_P001	Maize	extracellular	85.09	82.91
EES06908	Sorghum	extracellular, vacuole	79.82	77.12
KRG90715	Soybean	nucleus	47.81	52.15
VIT_08s0007g03430.t01	Wine grape	cytosol	46.05	51.72
PGSC0003DMT400061586	Potato	extracellular	46.05	49.53
KRH36030	Soybean	extracellular	39.91	49.19
CDY22215	Canola	extracellular	48.25	48.67
Solyc11g006980.1.1	Tomato	extracellular	45.18	48.58
Bra034093.1-P	Field mustard	extracellular	47.81	48.23
CDY41321	Canola	extracellular	47.81	48.23
KRH32736	Soybean	extracellular, vacuole	46.93	47.35
KRH30838	Soybean	extracellular	46.49	46.9
TraesCS6A01G382000.1	Wheat	cytosol	22.81	42.62
TraesCS6A01G382900.1	Wheat	extracellular	38.6	40.74
TraesCS6A01G383000.1	Wheat	extracellular	38.16	40.28
TraesCS3A01G165500.1	Wheat	extracellular	38.6	40.0
TraesCS6A01G382200.1	Wheat	extracellular	37.28	39.35
TraesCS1A01G080000.1	Wheat	extracellular	38.16	38.84
TraesCS3A01G040900.1	Wheat	extracellular	38.16	38.67
TraesCS5A01G453200.1	Wheat	extracellular	38.6	38.26
TraesCS6A01G382100.1	Wheat	extracellular, plasma membrane, vacuole	35.96	37.96
TraesCS4A01G278900.1	Wheat	extracellular, unclear	37.72	37.89
AT3G10080.2	Thale cress	mitochondrion	49.12	37.58
TraesCS4A01G181700.1	Wheat	extracellular	36.4	37.05
TraesCS2A01G211800.1	Wheat	extracellular	36.84	37.0
TraesCS4A01G279100.1	Wheat	extracellular	35.53	36.49
TraesCS4A01G279300.1	Wheat	extracellular	35.09	35.87
TraesCS4A01G181900.1	Wheat	extracellular	35.09	35.87
TraesCS4A01G279200.1	Wheat	extracellular	35.09	35.71
TraesCS4A01G010200.1	Wheat	cytosol, extracellular	32.89	35.55
TraesCS3A01G253300.1	Wheat	extracellular	34.21	35.14
TraesCS2A01G109200.1	Wheat	extracellular	33.77	34.84
TraesCS4A01G181600.1	Wheat	mitochondrion	26.75	34.66
TraesCS2A01G075000.1	Wheat	extracellular	30.7	32.86
TraesCS4A01G181800.1	Wheat	extracellular	25.0	32.76
TraesCS7A01G178300.1	Wheat	extracellular	30.26	32.55

Protein Annotations

EnsemblPlants:TraesCS6A01G028700.1	EnsemblPlantsGene:TraesCS6A01G028700	Gene3D:2.60.120.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0030145
GO:GO:0045735	InterPro:Cupin_1	InterPro:Germin	InterPro:IPR014710	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf
PANTHER:PTHR31238	PANTHER:PTHR31238:SF8	PFAM:PF00190	PRINTS:PR00325	SEG:seg	SignalP:SignalP-noTM
SMART:SM00835	SUPFAM:SSF51182	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr6A:-:14603264..14603950

Molecular Weight (calculated)

24112.0 Da

IEP (calculated)

6.795

GRAVY (calculated)

0.156

Length

228 amino acids

Sequence
(BLAST)

001: MATHHLALLL LAALLPAAAI GADPDAVQDF CVPDPGRGRP VELNLIRSYP CRSPANLTAG DFAFSGVRVA GNFSAETGFA GVSVTPAQFP GLHTLGMSFA
101: RADLSAAGGV NPPHYHPRAT ETALVLAGRV YAGFVDTGGR LFAKVLVEGE VMVFPRGMVH FQLNVGDQPA TVYGTFNSEN PGIVRIPATV FGSGIRDAVL
201: ERAFGLTVEE LRRIEKRFGV PKKAELED

Best Arabidopsis Sequence Match ( AT3G10080.2 )
(BLAST)

001: MYRPNHSHNQ NHISKRGFSF GTKTHTLISQ TKFWLIKSNH LNQSLIYPHQ IYICLFKPDV TQLFFTWTSS KMEANTLFLL KALCLLCFNV CFTLASDPDP
101: IQDFCIPKPV TSPYHDHHFS TNLPCKNSSE VTTEDFVFSG LKTAGNFTET GFATVPVGPE NFPGLNTLGI SFVRADLKPG SINPPHYHPR ATEVAHLVKG
201: RVYSGFVDSN NKVYAKVMEE GEMMVYPKGL VHFQMNVGDV TATIVGGLNS QNPGIQKIPS VVFGSGINEE LLMKAFGLSL KQIGTLKKRF DPVMSNEH

Arabidopsis Description

RmlC-like cupins superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSI8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.