Skip to main content
crop-pal logo
Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 7
  • endoplasmic reticulum 5
  • vacuole 6
  • plasma membrane 5
  • golgi 5
  • nucleus 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:mitochondrion, nucleus, secretory
BaCelLo:secretory
EpiLoc:nucleus
iPSORT:secretory
MultiLoc:vacuole
Plant-mPloc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:mitochondrion
YLoc:extracellular
plasma membrane: 27800704
extracellular: 28232208
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 28232208 doi
Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6A01G028700.1 Wheat extracellular, unclear 86.46 86.84
TraesCS6D01G033100.1 Wheat golgi 86.03 86.4
TraesCS6B01G041100.1 Wheat extracellular 86.03 86.4
HORVU6Hr1G005420.1 Barley extracellular 85.15 85.53
Zm00001d016697_P001 Maize extracellular 85.15 83.33
EES06908 Sorghum extracellular, vacuole 82.1 79.66
VIT_08s0007g03430.t01 Wine grape cytosol 47.6 53.69
KRG90715 Soybean nucleus 48.47 53.11
PGSC0003DMT400061586 Potato extracellular 47.6 51.42
Solyc11g006980.1.1 Tomato extracellular 46.72 50.47
KRH36030 Soybean extracellular 40.61 50.27
CDY22215 Canola extracellular 48.91 49.56
KRH30838 Soybean extracellular 48.91 49.56
KRH32736 Soybean extracellular, vacuole 48.91 49.56
Bra034093.1-P Field mustard extracellular 48.47 49.12
CDY41321 Canola extracellular 48.47 49.12
Os01t0249200-01 Rice extracellular 40.61 40.97
Os01t0284500-01 Rice extracellular 37.99 40.28
Os03t0804700-00 Rice plastid 39.3 40.0
Os05t0277500-01 Rice extracellular 38.43 39.82
Os03t0651800-00 Rice extracellular 37.99 39.19
Os01t0952000-02 Rice extracellular 37.55 38.56
AT3G10080.2 Thale cress mitochondrion 49.78 38.26
Os03t0693700-01 Rice extracellular, plasma membrane, vacuole 36.68 37.0
Os01t0952100-00 Rice extracellular 37.55 36.6
Os03t0179100-00 Rice extracellular, vacuole 35.37 36.0
Os03t0694000-01 Rice extracellular 35.37 35.37
Os03t0693800-00 Rice extracellular 35.37 35.37
Os01t0705100-00 Rice extracellular 33.62 34.38
Os03t0693900-00 Rice extracellular 34.06 34.36
Os08t0460000-01 Rice extracellular 31.88 34.27
Os03t0804500-01 Rice extracellular 32.75 32.19
Os08t0459700-00 Rice extracellular 29.26 30.59
Os04t0288100-00 Rice mitochondrion 24.02 22.18
Protein Annotations
Gene3D:2.60.120.10MapMan:35.1EntrezGene:4329551EMBL:AK059817ProteinID:BAD28420.1ProteinID:BAF08939.1
ProteinID:BAS79042.1InterPro:Cupin_1GO:GO:0003674GO:GO:0005488GO:GO:0005575GO:GO:0005576
GO:GO:0005618GO:GO:0005623GO:GO:0030145GO:GO:0030312GO:GO:0045735GO:GO:0046872
GO:GO:0048046InterPro:GerminInterPro:IPR014710EnsemblPlantsGene:Os02g0532500EnsemblPlants:Os02t0532500-01PFAM:PF00190
PRINTS:PR00325PANTHER:PTHR31238PANTHER:PTHR31238:SF8UniProt:Q6ESF0InterPro:RmlC-like_jellyrollInterPro:RmlC_Cupin_sf
SMART:SM00835SUPFAM:SSF51182SignalP:SignalP-noTMUniParc:UPI00003CE6D1RefSeq:XP_015622959.1SEG:seg
Description
GERMIN-LIKE PROTEIN 2-4Germin-like protein, Fungal blast and bacterial blight resistance (Os02t0532500-01)
Coordinates
chr2:-:19597550..19598541
Molecular Weight (calculated)
24319.4 Da
IEP (calculated)
8.495
GRAVY (calculated)
0.073
Length
229 amino acids
Sequence
(BLAST)
001: MAHRRRCLLL LLAVLLPAMA ARGDPDAVQD FCVPDAGRGR PVELAMLPAY PCRSPANLTA GDFAFSGVRA AGNFSPETGF AGVSVTPAQF PGLHTLGMSF
101: ARADLSAAGG VNPPHYHPRA TETALVLAGR VYAGFVDSGG RLFAKVLEQG EVMVFPRAMV HFQLNVGDTP ATVYGAFNSE NPGIVRIPAT VFGSGIREAV
201: LERAFGLTPA ELRRLEKRFG PPKKAEMED
Best Arabidopsis Sequence Match ( AT3G10080.2 )
(BLAST)
001: MYRPNHSHNQ NHISKRGFSF GTKTHTLISQ TKFWLIKSNH LNQSLIYPHQ IYICLFKPDV TQLFFTWTSS KMEANTLFLL KALCLLCFNV CFTLASDPDP
101: IQDFCIPKPV TSPYHDHHFS TNLPCKNSSE VTTEDFVFSG LKTAGNFTET GFATVPVGPE NFPGLNTLGI SFVRADLKPG SINPPHYHPR ATEVAHLVKG
201: RVYSGFVDSN NKVYAKVMEE GEMMVYPKGL VHFQMNVGDV TATIVGGLNS QNPGIQKIPS VVFGSGINEE LLMKAFGLSL KQIGTLKKRF DPVMSNEH
Arabidopsis Description
RmlC-like cupins superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSI8]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.