Factsheet for Os01t0249200-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 7
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

extracellular: 19038476
extracellular: 19226311
extracellular: 23159799
extracellular: 24083427
nucleus: 24133045
extracellular: 25047395
plastid: 27992503
extracellular: 28232208

msms PMID: 24133045 doi

DK Jaiswal, D Ray, MK Choudhary, P Subba, A Kumar, J Verma, R Kumar, A Datta, S Chakraborty, N Chakraborty

National Institute of Plant Genome Research, New Delhi, India.

msms PMID: 25047395 doi

JY Kim, J Wu, SJ Kwon, H Oh, SE Lee, SG Kim, Y Wang, GK Agrawal, R Rakwal, KY Kang, IP Ahn, BG Kim, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.

msms PMID: 23159799 doi

SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang

Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 24083427 doi

T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu

Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.

msms PMID: 19226311 doi

WK Cho, XY Chen, H Chu, Y Rim, S Kim, ST Kim, SW Kim, ZY Park, JY Kim

Division of Applied Life Science (BK21 Program), Graduate School, Environmental Biotechnology National Core Research Center, PMBBRC, Gyeongsang National University, Jinju, Korea.

msms PMID: 19038476 doi

XY Chen, ST Kim, WK Cho, Y Rim, S Kim, SW Kim, KY Kang, ZY Park, JY Kim

Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju 660-701, Republic of Korea.

msms PMID: 28232208 doi

Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G200200.1	Wheat	extracellular	80.18	82.73
TraesCS3A01G165500.1	Wheat	extracellular	80.18	82.73
TraesCS3D01G176100.1	Wheat	extracellular	79.74	82.27
EES02420	Sorghum	extracellular	79.3	79.65
Os05t0277500-01	Rice	extracellular	70.04	71.95
GSMUA_Achr8P18750_001	Banana	extracellular, vacuole	66.52	69.91
GSMUA_Achr1P25160_001	Banana	extracellular	66.96	69.41
Os01t0284500-01	Rice	extracellular	65.64	68.98
GSMUA_AchrUn_...	Banana	extracellular	65.64	68.35
VIT_14s0060g00120.t01	Wine grape	extracellular	64.32	67.28
GSMUA_Achr5P18440_001	Banana	extracellular	64.76	67.12
KRH68383	Soybean	nucleus	64.32	66.97
KRG96655	Soybean	extracellular, vacuole	63.0	65.3
CDY11392	Canola	extracellular	63.0	65.0
Bra007652.1-P	Field mustard	extracellular	63.0	65.0
AT1G09560.1	Thale cress	extracellular	62.56	64.84
Bra031671.1-P	Field mustard	extracellular	61.67	64.81
CDY06361	Canola	extracellular	61.67	64.81
AT3G62020.1	Thale cress	extracellular, vacuole	62.56	64.55
GSMUA_Achr8P29820_001	Banana	extracellular	65.2	64.35
KRH33715	Soybean	nucleus	63.0	64.13
CDX76609	Canola	extracellular	62.11	64.09
KRH33688	Soybean	extracellular	62.11	64.09
VIT_07s0005g02380.t01	Wine grape	extracellular	61.23	64.06
PGSC0003DMT400047067	Potato	cytosol	59.47	63.98
CDY31080	Canola	extracellular	61.67	63.93
CDY22633	Canola	extracellular	60.79	63.89
KRG90420	Soybean	extracellular, nucleus	63.0	63.84
PGSC0003DMT400047065	Potato	cytosol, extracellular	59.03	63.81
CDY50897	Canola	extracellular	62.11	63.8
KRH33687	Soybean	extracellular	62.11	63.8
CDX93502	Canola	extracellular	62.56	63.68
AT1G02335.1	Thale cress	extracellular, vacuole	61.23	63.47
KRH69151	Soybean	cytosol	42.73	63.4
CDY15231	Canola	extracellular, vacuole	60.79	63.3
CDX89983	Canola	extracellular, vacuole	60.79	63.3
Bra033314.1-P	Field mustard	extracellular, vacuole	60.79	63.3
Bra020014.1-P	Field mustard	extracellular	62.11	63.23
Bra030785.1-P	Field mustard	extracellular	61.23	63.18
CDY20692	Canola	extracellular	61.23	63.18
KRG96631	Soybean	extracellular, vacuole	50.66	62.5
HORVU3Hr1G034100.2	Barley	cytosol, plastid	71.37	61.36
Solyc01g102390.2.1	Tomato	extracellular	59.47	61.36
Solyc01g102400.2.1	Tomato	extracellular	59.03	60.91
Os03t0651800-00	Rice	extracellular	59.47	60.81
Solyc01g102380.2.1	Tomato	extracellular	59.91	60.71
Os01t0952000-02	Rice	extracellular	59.47	60.54
VIT_07s0005g02370.t01	Wine grape	extracellular	57.27	59.91
KXG32174	Sorghum	plastid	77.97	56.01
Os01t0952100-00	Rice	extracellular	56.83	54.89
Os01t0705100-00	Rice	extracellular	46.7	47.32
Os03t0693700-01	Rice	extracellular, plasma membrane, vacuole	44.93	44.93
Os03t0804700-00	Rice	plastid	43.61	44.0
Os03t0804500-01	Rice	extracellular	44.05	42.92
Os03t0693900-00	Rice	extracellular	42.73	42.73
Os03t0694000-01	Rice	extracellular	42.73	42.36
Os03t0693800-00	Rice	extracellular	42.29	41.92
Os02t0532500-01	Rice	extracellular	40.97	40.61
Os08t0460000-01	Rice	extracellular	37.0	39.44
Os03t0179100-00	Rice	extracellular, vacuole	37.44	37.78
Os08t0459700-00	Rice	extracellular	33.92	35.16
Os04t0288100-00	Rice	mitochondrion	28.19	25.81

Protein Annotations

Gene3D:2.60.120.10	MapMan:35.1	EntrezGene:4327219	ProteinID:AAD38298.1	EMBL:AK061046	ProteinID:BAB18339.1
ProteinID:BAF04503.1	ProteinID:BAS71338.1	InterPro:Cupin_1	ProteinID:EAZ11253.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0006810	GO:GO:0007275
GO:GO:0008150	GO:GO:0009506	GO:GO:0009987	GO:GO:0010497	GO:GO:0030145	GO:GO:0030312
GO:GO:0045735	GO:GO:0046872	GO:GO:2000280	InterPro:Germin	InterPro:Germin_Mn-BS	InterPro:IPR014710
EnsemblPlantsGene:Os01g0249200	EnsemblPlants:Os01t0249200-01	PFAM:PF00190	PRINTS:PR00325	ScanProsite:PS00725	PANTHER:PTHR31238
PANTHER:PTHR31238:SF22	UniProt:Q9XHW8	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	SMART:SM00835	SUPFAM:SSF51182
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000009D0DC	RefSeq:XP_015612310.1	SEG:seg	:

Description

GERMIN-LIKE PROTEIN 1-1Similar to Nectarin 1 precursor (EC 1.15.1.1) (Superoxide dismutase [Mn]). (Os01t0249200-01)

Coordinates

chr1:-:8203832..8206969

Molecular Weight (calculated)

23195.5 Da

IEP (calculated)

5.196

GRAVY (calculated)

0.261

Length

227 amino acids

Sequence
(BLAST)

001: MAGAAGSSWS SLLLAAVAVA LAVAAAPSLA GDPDYLQDIC VADLNSEVKV NGFPCKANAT ADDFFSGVLA SPGAAANTTT GAVVTGANVE KVPGLNTLGV
101: SLARIDYAPG GLNPPHTHPR ATEVVFVLYG ELDVGFVTTA NKLLSRTISQ GDVFVFPRGL VHFQRNTGDK PAAVVSAFNS QLPGTQSIAA TLFAASPAVP
201: DAVLAKAFQI DDEEVDKIKA KFAPKKT

Best Arabidopsis Sequence Match ( AT3G62020.1 )
(BLAST)

001: MDSRCFGFFF TLLSLNVIVL AYDPDTLQDL CVADRTSGIK VNGFTCKPES NITASDFFFA GIGKPAVVNN TVGSAVTGAN VEKIAGLNTL GVSLARIDYA
101: PGGLNPPHTH PRATEVIFVL EGELDVGFIT TANKLFAKTV KKGEVFVFPR GLIHYQKNND KAKPASVISA FNSQLPGTQS IAATLFTATP AIPDHVLTTT
201: FQIGTKEIEK IKSKFAPKKV

Arabidopsis Description

GLP10At3g62020 [Source:UniProtKB/TrEMBL;Acc:A0JQ09]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.