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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • extracellular 8
  • endoplasmic reticulum 5
  • vacuole 7
  • plasma membrane 5
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:secretory
BaCelLo:secretory
EpiLoc:vacuole
iPSORT:secretory
MultiLoc:vacuole
Plant-mPloc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:extracellular
 nucleus: 21132161
nucleus: 27291164
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRG96655 Soybean extracellular, vacuole 95.41 94.98
KRH33715 Soybean nucleus 83.94 82.06
KRG90420 Soybean extracellular, nucleus 82.57 80.36
VIT_14s0060g00120.t01 Wine grape extracellular 78.9 79.26
GSMUA_AchrUn_... Banana extracellular 73.85 73.85
GSMUA_Achr1P25160_001 Banana extracellular 73.85 73.52
GSMUA_Achr8P18750_001 Banana extracellular, vacuole 72.02 72.69
Os05t0277500-01 Rice extracellular 72.48 71.49
GSMUA_Achr5P18440_001 Banana extracellular 71.1 70.78
PGSC0003DMT400047067 Potato cytosol 67.89 70.14
TraesCS3D01G176100.1 Wheat extracellular 70.18 69.55
PGSC0003DMT400047065 Potato cytosol, extracellular 66.97 69.52
TraesCS1D01G081700.1 Wheat extracellular 71.1 69.2
TraesCS3B01G200200.1 Wheat extracellular 69.72 69.09
TraesCS1B01G098000.1 Wheat extracellular 71.56 69.03
TraesCS3A01G165500.1 Wheat extracellular 69.27 68.64
KRH33688 Soybean extracellular 68.81 68.18
TraesCS1A01G080000.1 Wheat extracellular 69.72 67.86
Solyc01g102390.2.1 Tomato extracellular 68.35 67.73
Solyc01g102400.2.1 Tomato extracellular 67.89 67.27
KRH33687 Soybean extracellular 67.89 66.97
GSMUA_Achr8P29820_001 Banana extracellular 69.27 65.65
Os01t0249200-01 Rice extracellular 66.97 64.32
EES02420 Sorghum extracellular 66.51 64.16
KRH69151 Soybean cytosol 44.95 64.05
Solyc01g102380.2.1 Tomato extracellular 65.14 63.39
KRG96631 Soybean extracellular, vacuole 53.21 63.04
EER95948 Sorghum extracellular 66.51 62.77
Zm00001d018954_P002 Maize extracellular 64.22 60.61
HORVU3Hr1G034100.2 Barley cytosol, plastid 63.76 52.65
KXG32174 Sorghum plastid 66.51 45.89
HORVU1Hr1G017170.1 Barley extracellular, plastid, vacuole 69.72 45.37
KRH74710 Soybean extracellular 45.41 45.0
KRH69437 Soybean extracellular 44.95 44.55
KRG90715 Soybean nucleus 39.91 41.63
KRH36030 Soybean extracellular 33.03 38.92
KRH47606 Soybean extracellular, vacuole 36.24 37.98
KRH02617 Soybean nucleus 36.24 37.98
KRH47602 Soybean extracellular, vacuole 36.24 37.98
KRH06186 Soybean extracellular, vacuole 36.24 37.8
KRH47600 Soybean extracellular 35.78 37.32
KRH32736 Soybean extracellular, vacuole 38.07 36.73
KRH06188 Soybean extracellular 30.28 36.46
KRH30838 Soybean extracellular 37.61 36.28
KRH12528 Soybean extracellular 35.32 36.15
KRH47603 Soybean extracellular, vacuole 36.24 35.11
KRH47601 Soybean endoplasmic reticulum 33.49 35.1
KRH47605 Soybean extracellular 16.51 33.64
KRH19305 Soybean cytosol, extracellular, plastid 33.49 33.64
KRH07140 Soybean extracellular, vacuole 32.11 33.33
KRH06189 Soybean endoplasmic reticulum, extracellular, vacuole 30.28 32.04
KRH07144 Soybean extracellular, vacuole 28.9 29.58
KRH07141 Soybean cytosol 23.85 25.74
Protein Annotations
EntrezGene:100302722Gene3D:2.60.120.10MapMan:35.1EMBL:ACUP02002108UniProt:C7S8D5InterPro:Cupin_1
EMBL:EU916269EnsemblPlantsGene:GLYMA_03G227400GO:GO:0003674GO:GO:0005488GO:GO:0005575GO:GO:0005576
GO:GO:0005618GO:GO:0005623GO:GO:0006810GO:GO:0007275GO:GO:0008150GO:GO:0009506
GO:GO:0009987GO:GO:0010497GO:GO:0030145GO:GO:0030312GO:GO:0045735GO:GO:0046872
GO:GO:2000280InterPro:GerminInterPro:Germin_Mn-BSInterPro:IPR014710EnsemblPlants:KRH68383ProteinID:KRH68383
ProteinID:KRH68383.1PFAM:PF00190PRINTS:PR00325ScanProsite:PS00725PANTHER:PTHR31238PANTHER:PTHR31238:SF39
InterPro:RmlC-like_jellyrollInterPro:RmlC_Cupin_sfSMART:SM00835SUPFAM:SSF51182SignalP:SignalP-noTMUniParc:UPI0001B1E5C3
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr3:-:42925512..42927286
Molecular Weight (calculated)
22847.6 Da
IEP (calculated)
9.525
GRAVY (calculated)
0.173
Length
218 amino acids
Sequence
(BLAST)
001: MKLTGFLQAV TLALVLATVS ASDPDPLQDL CVADLASAVK VNGFTCKDAA KVNASDFFSD ILAKPGATNN TYGSLVTGAN VQKIPGLNTL GVSLSRIDYA
101: PGGINPPHTH PRATEVVFVL EGTLDVGFIT TANVLISKSI SKGEIFVFPK GLVHFQKNNG KEQASVIAAF NSQLPGTQSI ALTLFAATPP VPDNVLTKAF
201: QVGTKEVEKI KSRLAPKK
Best Arabidopsis Sequence Match ( AT1G09560.1 )
(BLAST)
001: MASPTLTLLL LLTTVSFFIS SSADPDMLQD LCVADLPSGI KINGFPCKDA ATVTSADFFS QGLAKPGLTN NTFGALVTGA NVMTIPGLNT LGVSLSRIDY
101: APGGLNPPHT HPRATEVVFV LEGTLDVGFL TTANKLISQS LKKGDVFAFP KGLVHFQKNN GDVPASVIAA FNSQLPGTQS LGATLFGSTP PVPDNILAQA
201: FQTSPGTVKH IKSKFQPKK
Arabidopsis Description
GLP4Germin-like protein subfamily 2 member 1 [Source:UniProtKB/Swiss-Prot;Acc:P94014]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.