CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 7
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH12528	Soybean	extracellular	81.25	79.34
KRH19305	Soybean	cytosol, extracellular, plastid	77.88	74.65
VIT_11s0016g01220.t01	Wine grape	extracellular	71.15	71.15
KRH06186	Soybean	extracellular, vacuole	70.67	70.33
KRH47600	Soybean	extracellular	70.19	69.86
Bra002316.1-P	Field mustard	extracellular	70.67	69.67
CDY51841	Canola	extracellular, plasma membrane, vacuole	70.67	69.67
CDY22866	Canola	extracellular	70.67	69.67
CDY16549	Canola	extracellular	70.67	69.67
CDX85429	Canola	extracellular	70.67	69.67
Bra006567.1-P	Field mustard	extracellular, plasma membrane, vacuole	70.67	69.67
CDX92448	Canola	extracellular	70.67	69.67
AT5G20630.1	Thale cress	extracellular, plasma membrane, vacuole	70.19	69.19
Bra020113.1-P	Field mustard	extracellular, plasma membrane, vacuole	69.71	68.72
CDY45080	Canola	extracellular, plasma membrane, vacuole	69.71	68.72
CDX70935	Canola	extracellular, vacuole	69.71	68.72
PGSC0003DMT400033858	Potato	extracellular	69.23	68.25
Solyc07g041720.1.1	Tomato	nucleus, plastid	67.79	66.82
TraesCS7A01G178300.1	Wheat	extracellular	64.42	63.21
TraesCS2B01G090300.1	Wheat	extracellular	64.42	63.21
TraesCS2D01G073700.1	Wheat	extracellular	64.42	63.21
TraesCS7B01G084000.1	Wheat	plastid	64.42	63.21
TraesCS7D01G180200.1	Wheat	extracellular, vacuole	64.42	63.21
HORVU7Hr1G036720.1	Barley	extracellular	63.94	62.74
TraesCS2D01G073600.1	Wheat	extracellular	62.5	62.5
TraesCS2A01G075000.1	Wheat	extracellular	63.94	62.44
Os08t0460000-01	Rice	extracellular	62.98	61.5
Bra020115.1-P	Field mustard	extracellular	62.5	61.32
CDY27880	Canola	extracellular	62.5	61.32
CDY45077	Canola	extracellular	62.5	61.32
CDY45079	Canola	extracellular, vacuole	62.02	58.9
Bra020114.1-P	Field mustard	extracellular, vacuole	62.02	58.9
KRH47601	Soybean	endoplasmic reticulum	58.65	58.65
KRH47606	Soybean	extracellular, vacuole	57.21	57.21
KRH47602	Soybean	extracellular, vacuole	57.21	57.21
Zm00001d037513_P001	Maize	plastid	58.17	57.08
EES17780	Sorghum	extracellular, vacuole	59.13	55.66
GSMUA_Achr9P16110_001	Banana	plasma membrane, plastid, vacuole	67.31	54.69
KRH06188	Soybean	extracellular	47.12	54.14
GSMUA_Achr2P18710_001	Banana	extracellular	63.46	52.8
KRH47603	Soybean	extracellular, vacuole	56.25	52.0
KRH47605	Soybean	extracellular	25.0	48.6
KRH06189	Soybean	endoplasmic reticulum, extracellular, vacuole	45.19	45.63
KRH07140	Soybean	extracellular, vacuole	44.23	43.81
KRH07144	Soybean	extracellular, vacuole	44.23	43.19
KRH07141	Soybean	cytosol	38.94	40.1
KRG90420	Soybean	extracellular, nucleus	41.35	38.39
KRH33715	Soybean	nucleus	40.87	38.12
KRG90715	Soybean	nucleus	36.54	36.36
KRH68383	Soybean	nucleus	37.98	36.24
KRG96655	Soybean	extracellular, vacuole	37.98	36.07
KRH33688	Soybean	extracellular	37.98	35.91
KRG96631	Soybean	extracellular, vacuole	31.25	35.33
KRH33687	Soybean	extracellular	36.54	34.39
KRH36030	Soybean	extracellular	29.81	33.51
KRH69151	Soybean	cytosol	24.52	33.33
KRH74710	Soybean	extracellular	35.1	33.18
KRH30838	Soybean	extracellular	35.1	32.3
KRH69437	Soybean	extracellular	34.13	32.27
KRH32736	Soybean	extracellular, vacuole	34.62	31.86

Protein Annotations

EntrezGene:100800387	Gene3D:2.60.120.10	MapMan:35.1	EMBL:ACUP02010312	InterPro:Cupin_1	EnsemblPlantsGene:GLYMA_17G049800
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623
GO:GO:0030145	GO:GO:0030312	GO:GO:0045735	GO:GO:0046872	InterPro:Germin	InterPro:Germin_Mn-BS
UniProt:I1MSB1	InterPro:IPR014710	EnsemblPlants:KRH02617	ProteinID:KRH02617	ProteinID:KRH02617.1	PFAM:PF00190
PRINTS:PR00325	ScanProsite:PS00725	PANTHER:PTHR31238	PANTHER:PTHR31238:SF92	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf
SMART:SM00835	SUPFAM:SSF51182	SignalP:SignalP-noTM	UniParc:UPI000233E6B6	SEG:seg	:

Description

hypothetical protein

Coordinates

chr17:-:3781889..3782955

Molecular Weight (calculated)

21330.1 Da

IEP (calculated)

8.697

GRAVY (calculated)

0.663

Length

208 amino acids

Sequence
(BLAST)

001: MILIISLIFS LLSFSHASVL DFCVADYAGP IGPAGYSCKK PSKVTADDFA YSGLGIAGNT SNIIKAAVTP AFDAQFAGLN GLGISAARLD LAAGGVIPLH
101: THPGASELLV VIEGSILAGF ISSANIVYLK TLKKGDVMAF PQGLLHFQIN AGKSSALAIV SFSSSNPGLQ ILDFALFKSS FPTPLIVQTT FLDAALVKKL
201: KGVLGGSG

Best Arabidopsis Sequence Match ( AT5G20630.1 )
(BLAST)

001: MKMIIQIFFI ISLISTISFA SVQDFCVADP KGPQSPSGYS CKNPDQVTEN DFAFTGLGTA GNTSNIIKAA VTPAFAPAYA GINGLGVSLA RLDLAGGGVI
101: PLHTHPGASE VLVVIQGTIC AGFISSANKV YLKTLNRGDS MVFPQGLLHF QLNSGKGPAL AFVAFGSSSP GLQILPFALF ANDLPSELVE ATTFLSDAEV
201: KKLKGVLGGT N

Arabidopsis Description

GER3Germin-like protein subfamily 3 member 3 [Source:UniProtKB/Swiss-Prot;Acc:P94072]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.