CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus

Predictor Summary:

extracellular 9
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33715	Soybean	nucleus	95.54	95.96
KRG96655	Soybean	extracellular, vacuole	80.8	82.65
KRH68383	Soybean	nucleus	80.36	82.57
VIT_14s0060g00120.t01	Wine grape	extracellular	73.21	75.58
PGSC0003DMT400047067	Potato	cytosol	67.41	71.56
PGSC0003DMT400047065	Potato	cytosol, extracellular	66.52	70.95
GSMUA_Achr1P25160_001	Banana	extracellular	69.2	70.78
GSMUA_Achr5P18440_001	Banana	extracellular	69.2	70.78
GSMUA_AchrUn_...	Banana	extracellular	67.86	69.72
Os05t0277500-01	Rice	extracellular	68.75	69.68
TraesCS1D01G081700.1	Wheat	extracellular	69.2	69.2
GSMUA_Achr8P18750_001	Banana	extracellular, vacuole	66.52	68.98
TraesCS1B01G098000.1	Wheat	extracellular	69.2	68.58
TraesCS3B01G200200.1	Wheat	extracellular	66.96	68.18
TraesCS3D01G176100.1	Wheat	extracellular	66.96	68.18
Solyc01g102390.2.1	Tomato	extracellular	66.96	68.18
Solyc01g102400.2.1	Tomato	extracellular	66.96	68.18
TraesCS1A01G080000.1	Wheat	extracellular	67.86	67.86
TraesCS3A01G165500.1	Wheat	extracellular	65.62	66.82
KRH33688	Soybean	extracellular	64.73	65.91
KRH33687	Soybean	extracellular	63.84	64.71
GSMUA_Achr8P29820_001	Banana	extracellular	66.07	64.35
EES02420	Sorghum	extracellular	64.29	63.72
Os01t0249200-01	Rice	extracellular	63.84	63.0
Solyc01g102380.2.1	Tomato	extracellular	62.5	62.5
KRG96631	Soybean	extracellular, vacuole	50.89	61.96
EER95948	Sorghum	extracellular	62.95	61.04
KRH69151	Soybean	cytosol	41.52	60.78
Zm00001d018954_P002	Maize	extracellular	61.61	59.74
HORVU3Hr1G034100.2	Barley	cytosol, plastid	60.27	51.14
HORVU1Hr1G017170.1	Barley	extracellular, plastid, vacuole	69.64	46.57
KXG32174	Sorghum	plastid	64.73	45.89
KRH74710	Soybean	extracellular	41.96	42.73
KRH69437	Soybean	extracellular	41.07	41.82
KRH02617	Soybean	nucleus	38.39	41.35
KRH47602	Soybean	extracellular, vacuole	37.95	40.87
KRH47606	Soybean	extracellular, vacuole	37.95	40.87
KRH06188	Soybean	extracellular	32.14	39.78
KRG90715	Soybean	nucleus	37.05	39.71
KRH06186	Soybean	extracellular, vacuole	36.16	38.76
KRH12528	Soybean	extracellular	36.16	38.03
KRH47600	Soybean	extracellular	35.27	37.8
KRH47603	Soybean	extracellular, vacuole	37.95	37.78
KRH36030	Soybean	extracellular	30.8	37.3
KRH47601	Soybean	endoplasmic reticulum	34.38	37.02
KRH07140	Soybean	extracellular, vacuole	33.93	36.19
KRH06189	Soybean	endoplasmic reticulum, extracellular, vacuole	32.59	35.44
KRH19305	Soybean	cytosol, extracellular, plastid	33.93	35.02
KRH32736	Soybean	extracellular, vacuole	35.27	34.96
KRH47605	Soybean	extracellular	16.52	34.58
KRH30838	Soybean	extracellular	34.82	34.51
KRH07144	Soybean	extracellular, vacuole	29.91	31.46
KRH07141	Soybean	cytosol	24.55	27.23

Protein Annotations

Gene3D:2.60.120.10	MapMan:35.1	EMBL:ACUP02012612	InterPro:Cupin_1	EnsemblPlantsGene:GLYMA_20G090200	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0006810
GO:GO:0007275	GO:GO:0008150	GO:GO:0009506	GO:GO:0009987	GO:GO:0010497	GO:GO:0030145
GO:GO:0030312	GO:GO:0045735	GO:GO:0046872	GO:GO:2000280	InterPro:Germin	InterPro:Germin_Mn-BS
UniProt:I1NES8	InterPro:IPR014710	EnsemblPlants:KRG90420	ProteinID:KRG90420	ProteinID:KRG90420.1	PFAM:PF00190
PRINTS:PR00325	ScanProsite:PS00725	PANTHER:PTHR31238	PANTHER:PTHR31238:SF39	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf
SMART:SM00835	SUPFAM:SSF51182	SignalP:SignalP-noTM	UniParc:UPI00023DC5F4	SEG:seg	:

Description

hypothetical protein

Coordinates

chr20:-:33252162..33254505

Molecular Weight (calculated)

23732.9 Da

IEP (calculated)

10.161

GRAVY (calculated)

0.158

Length

224 amino acids

Sequence
(BLAST)

001: MMANHTMKMA NLLLLVTLAQ LLATAISSDP DLLQDLCVAD LASGVKVNGF TCKEASKVNA SDFFSNILAK PGATNNTFGS LVTGANVQKV PGLNTLGVSL
101: SRIDYAPGGI NPPHTHPRAT ELVFVLEGQL YVGFITTSNV LISKTINKGD IFVFPKGLLH FQKNNAKVPA AVISAFNSQL PGTQSTATTL FAATPSVPDH
201: VLTQTFQVGT KEVQKIKSRL APKK

Best Arabidopsis Sequence Match ( AT3G62020.1 )
(BLAST)

001: MDSRCFGFFF TLLSLNVIVL AYDPDTLQDL CVADRTSGIK VNGFTCKPES NITASDFFFA GIGKPAVVNN TVGSAVTGAN VEKIAGLNTL GVSLARIDYA
101: PGGLNPPHTH PRATEVIFVL EGELDVGFIT TANKLFAKTV KKGEVFVFPR GLIHYQKNND KAKPASVISA FNSQLPGTQS IAATLFTATP AIPDHVLTTT
201: FQIGTKEIEK IKSKFAPKKV

Arabidopsis Description

GLP10At3g62020 [Source:UniProtKB/TrEMBL;Acc:A0JQ09]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.