Factsheet for Solyc01g102400.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 7
plasma membrane 5
golgi 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

extracellular: 22364583
extracellular: 22892874
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 22892874 doi

EH Konozy, H Rogniaux, M Causse, M Faurobert

Unité de Génétique et Amélioration des Fruits et Légumes, INRA, BP 94, 84143 Montfavet, France. ehkonozy@yahoo.com

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g102390.2.1	Tomato	extracellular	98.18	98.18
PGSC0003DMT400047065	Potato	cytosol, extracellular	93.64	98.1
Solyc01g102380.2.1	Tomato	extracellular	73.18	71.88
VIT_14s0060g00120.t01	Wine grape	extracellular	68.18	69.12
KRH68383	Soybean	nucleus	67.27	67.89
KRG96655	Soybean	extracellular, vacuole	67.27	67.58
KRH33715	Soybean	nucleus	68.18	67.26
KRG90420	Soybean	extracellular, nucleus	68.18	66.96
GSMUA_Achr1P25160_001	Banana	extracellular	66.36	66.67
Os05t0277500-01	Rice	extracellular	66.36	66.06
GSMUA_Achr5P18440_001	Banana	extracellular	65.45	65.75
GSMUA_Achr8P18750_001	Banana	extracellular, vacuole	64.09	65.28
TraesCS1D01G081700.1	Wheat	extracellular	65.45	64.29
TraesCS3D01G176100.1	Wheat	extracellular	63.64	63.64
TraesCS3B01G200200.1	Wheat	extracellular	63.64	63.64
TraesCS1B01G098000.1	Wheat	extracellular	65.0	63.27
GSMUA_AchrUn_...	Banana	extracellular	62.27	62.84
TraesCS3A01G165500.1	Wheat	extracellular	62.73	62.73
VIT_07s0005g02380.t01	Wine grape	extracellular	61.36	62.21
TraesCS1A01G080000.1	Wheat	extracellular	63.18	62.05
CDY31080	Canola	extracellular	61.36	61.64
CDY20692	Canola	extracellular	61.36	61.36
Bra030785.1-P	Field mustard	extracellular	61.36	61.36
KRH33688	Soybean	extracellular	60.91	60.91
KRH33687	Soybean	extracellular	60.91	60.63
CDY06361	Canola	extracellular	59.09	60.19
Bra031671.1-P	Field mustard	extracellular	59.09	60.19
CDY22633	Canola	extracellular	58.64	59.72
AT1G09560.1	Thale cress	extracellular	59.09	59.36
CDY50897	Canola	extracellular	59.55	59.28
CDX93502	Canola	extracellular	60.0	59.19
Os01t0249200-01	Rice	extracellular	60.91	59.03
Bra020014.1-P	Field mustard	extracellular	59.55	58.74
VIT_07s0005g02370.t01	Wine grape	extracellular	57.73	58.53
Zm00001d018954_P002	Maize	extracellular	61.36	58.44
GSMUA_Achr8P29820_001	Banana	extracellular	60.45	57.83
EER95948	Sorghum	extracellular	60.45	57.58
KRH69151	Soybean	cytosol	40.0	57.52
EES02420	Sorghum	extracellular	58.64	57.08
KRG96631	Soybean	extracellular, vacuole	47.73	57.07
HORVU3Hr1G034100.2	Barley	cytosol, plastid	57.73	48.11
Solyc03g113580.1.1	Tomato	vacuole	45.45	46.08
Solyc03g113570.1.1	Tomato	vacuole	44.09	44.09
HORVU1Hr1G017170.1	Barley	extracellular, plastid, vacuole	65.91	43.28
KXG32174	Sorghum	plastid	58.64	40.82
Solyc05g006500.2.1	Tomato	extracellular	38.64	38.64
Solyc11g006980.1.1	Tomato	extracellular	35.0	36.32
Solyc03g123410.1.1	Tomato	nucleus	32.73	34.62
Solyc07g041720.1.1	Tomato	nucleus, plastid	32.73	34.12

Protein Annotations

Gene3D:2.60.120.10	MapMan:35.1	InterPro:Cupin_1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0006810	GO:GO:0007275	GO:GO:0008150
GO:GO:0009506	GO:GO:0009987	GO:GO:0010497	GO:GO:0030145	GO:GO:0030312	GO:GO:0045735
GO:GO:0046872	GO:GO:2000280	InterPro:Germin	InterPro:Germin_Mn-BS	InterPro:IPR014710	UniProt:K4B1G8
PFAM:PF00190	PRINTS:PR00325	ScanProsite:PS00725	PANTHER:PTHR31238	PANTHER:PTHR31238:SF18	InterPro:RmlC-like_jellyroll
InterPro:RmlC_Cupin_sf	SMART:SM00835	SUPFAM:SSF51182	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc01g102400.2	EnsemblPlants:Solyc01g102400.2.1
UniParc:UPI0002767C57	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:91222265..91224692

Molecular Weight (calculated)

23330.4 Da

IEP (calculated)

9.189

GRAVY (calculated)

0.220

Length

220 amino acids

Sequence
(BLAST)

001: MSAFGKFVVI MAVVMLAISL DKASAGDPDM LQDVCVADLT NSLTVNGYFC KKNFSEIDFS SMAIAKAGAT NNTFGSLVTG ANVMKVPGLN TLGVSMARID
101: YAPGGINPPH THPRATEMIF VLEGELDVGF ITTSNVLITK HIVKGEVFAF PRGLVHFQQN NGDVPAAVVA GFNSQLPGTQ SIATTLFASS PTVPDHVLTK
201: TFQVGTKQIQ KIKSRLAPKK

Best Arabidopsis Sequence Match ( AT1G09560.1 )
(BLAST)

001: MASPTLTLLL LLTTVSFFIS SSADPDMLQD LCVADLPSGI KINGFPCKDA ATVTSADFFS QGLAKPGLTN NTFGALVTGA NVMTIPGLNT LGVSLSRIDY
101: APGGLNPPHT HPRATEVVFV LEGTLDVGFL TTANKLISQS LKKGDVFAFP KGLVHFQKNN GDVPASVIAA FNSQLPGTQS LGATLFGSTP PVPDNILAQA
201: FQTSPGTVKH IKSKFQPKK

Arabidopsis Description

GLP4Germin-like protein subfamily 2 member 1 [Source:UniProtKB/Swiss-Prot;Acc:P94014]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.