Factsheet for Solyc03g123410.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036428	Potato	extracellular	96.63	96.63
Solyc07g041720.1.1	Tomato	nucleus, plastid	68.75	67.77
CDY51841	Canola	extracellular, plasma membrane, vacuole	66.83	65.88
Bra006567.1-P	Field mustard	extracellular, plasma membrane, vacuole	66.35	65.4
CDX70935	Canola	extracellular, vacuole	66.35	65.4
Bra002316.1-P	Field mustard	extracellular	64.9	63.98
CDY45080	Canola	extracellular, plasma membrane, vacuole	64.9	63.98
CDY22866	Canola	extracellular	64.9	63.98
CDY16549	Canola	extracellular	64.9	63.98
CDX85429	Canola	extracellular	64.9	63.98
AT5G20630.1	Thale cress	extracellular, plasma membrane, vacuole	64.9	63.98
CDX92448	Canola	extracellular	64.9	63.98
Bra020113.1-P	Field mustard	extracellular, plasma membrane, vacuole	64.9	63.98
VIT_09s0002g01320.t01	Wine grape	extracellular	61.54	61.24
VIT_18s0086g00410.t01	Wine grape	extracellular	60.1	59.81
VIT_18s0086g00590.t01	Wine grape	cytosol	35.1	59.35
TraesCS2B01G090300.1	Wheat	extracellular	60.1	58.96
VIT_09s0002g01330.t01	Wine grape	cytosol, extracellular, nucleus	27.88	58.59
TraesCS7A01G178300.1	Wheat	extracellular	59.62	58.49
TraesCS2D01G073700.1	Wheat	extracellular	59.62	58.49
TraesCS2A01G075000.1	Wheat	extracellular	59.62	58.22
HORVU7Hr1G036720.1	Barley	extracellular	59.13	58.02
TraesCS7D01G180200.1	Wheat	extracellular, vacuole	59.13	58.02
Os08t0460000-01	Rice	extracellular	59.13	57.75
TraesCS2D01G073600.1	Wheat	extracellular	57.69	57.69
TraesCS7B01G084000.1	Wheat	plastid	58.65	57.55
Zm00001d037513_P001	Maize	plastid	57.21	56.13
EES17780	Sorghum	extracellular, vacuole	58.65	55.2
GSMUA_Achr9P16110_001	Banana	plasma membrane, plastid, vacuole	66.83	54.3
VIT_07s0005g05920.t01	Wine grape	extracellular	54.33	54.07
Bra020114.1-P	Field mustard	extracellular, vacuole	56.73	53.88
CDY45079	Canola	extracellular, vacuole	56.73	53.88
Bra020115.1-P	Field mustard	extracellular	54.81	53.77
CDY27880	Canola	extracellular	54.81	53.77
CDY45077	Canola	extracellular	54.81	53.77
VIT_07s0005g05910.t01	Wine grape	extracellular	53.37	53.11
VIT_07s0005g05930.t01	Wine grape	extracellular	53.37	53.11
VIT_12s0059g00740.t01	Wine grape	cytosol	31.25	52.85
GSMUA_Achr2P18710_001	Banana	extracellular	60.1	50.0
VIT_09s0002g01340.t01	Wine grape	extracellular, vacuole	54.81	45.97
Solyc03g113570.1.1	Tomato	vacuole	36.06	34.09
Solyc11g006980.1.1	Tomato	extracellular	34.62	33.96
Solyc03g113580.1.1	Tomato	vacuole	34.62	33.18
Solyc01g102390.2.1	Tomato	extracellular	34.62	32.73
Solyc01g102400.2.1	Tomato	extracellular	34.62	32.73
Solyc05g006500.2.1	Tomato	extracellular	32.69	30.91
Solyc01g102380.2.1	Tomato	extracellular	32.21	29.91

Protein Annotations

Gene3D:2.60.120.10	MapMan:35.1	InterPro:Cupin_1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0030145	GO:GO:0030312	GO:GO:0045735
GO:GO:0046872	InterPro:Germin	InterPro:Germin_Mn-BS	InterPro:IPR014710	UniProt:K4BN40	PFAM:PF00190
PRINTS:PR00325	ScanProsite:PS00725	PANTHER:PTHR31238	PANTHER:PTHR31238:SF2	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf
SMART:SM00835	SUPFAM:SSF51182	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc03g123410.1	EnsemblPlants:Solyc03g123410.1.1	UniParc:UPI00027659F4
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3:-:70267724..70268350

Molecular Weight (calculated)

21571.0 Da

IEP (calculated)

6.237

GRAVY (calculated)

0.529

Length

208 amino acids

Sequence
(BLAST)

001: MFKLLFLLAI LLLSSDAAVQ DFCVADLKAP ESPSGYSCKS VTNVTVDDFV FSGLSAAGNT ASIIKAAVTP AFAAQFPGLN GLGLSAARLD LAPSGVIPFH
101: THPGASEILL VVQGSITAGF VSSANSVYLK TLKKGDLMVF PQGLLHFQVS DAGYTSVGYV FFSSSNPGLQ ITDFALFAND LPTKLVAATT FLDEATIKKL
201: KGVLGGTN

Best Arabidopsis Sequence Match ( AT1G72610.1 )
(BLAST)

001: MLRTIFLLSL LFALSNASVQ DFCVANLKRA ETPAGYPCIR PIHVKATDFV FSGLGTPGNT TNIINAAVTP AFAAQFPGLN GLGLSTARLD LAPKGVIPMH
101: THPGASEVLF VLTGSITAGF VSSANAVYVQ TLKPGQVMVF PQGLLHFQIN AGKSSASAVV TFNSANPGLQ ILDFALFANS LPTELVVGTT FLDATTVKKL
201: KGVLGGTG

Arabidopsis Description

GLP1Germin-like protein subfamily 3 member 1 [Source:UniProtKB/Swiss-Prot;Acc:P94040]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.