Factsheet for VIT_09s0002g01320.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0086g00410.t01	Wine grape	extracellular	93.3	93.3
VIT_18s0086g00590.t01	Wine grape	cytosol	52.63	89.43
VIT_12s0059g00740.t01	Wine grape	cytosol	44.98	76.42
VIT_07s0005g05930.t01	Wine grape	extracellular	75.6	75.6
VIT_07s0005g05910.t01	Wine grape	extracellular	75.6	75.6
VIT_07s0005g05920.t01	Wine grape	extracellular	75.12	75.12
VIT_09s0002g01330.t01	Wine grape	cytosol, extracellular, nucleus	32.54	68.69
VIT_11s0016g01220.t01	Wine grape	extracellular	65.55	65.87
Solyc03g123410.1.1	Tomato	nucleus	61.24	61.54
PGSC0003DMT400036428	Potato	extracellular	60.29	60.58
PGSC0003DMT400030317	Potato	extracellular	60.29	60.58
Bra020113.1-P	Field mustard	extracellular, plasma membrane, vacuole	60.77	60.19
CDY45080	Canola	extracellular, plasma membrane, vacuole	60.77	60.19
Bra006567.1-P	Field mustard	extracellular, plasma membrane, vacuole	60.29	59.72
CDY51841	Canola	extracellular, plasma membrane, vacuole	60.29	59.72
CDX70935	Canola	extracellular, vacuole	59.81	59.24
HORVU7Hr1G036720.1	Barley	extracellular	59.81	58.96
Bra002316.1-P	Field mustard	extracellular	59.33	58.77
CDX85429	Canola	extracellular	59.33	58.77
CDX92448	Canola	extracellular	59.33	58.77
CDY16549	Canola	extracellular	59.33	58.77
CDY22866	Canola	extracellular	59.33	58.77
TraesCS7A01G178300.1	Wheat	extracellular	59.33	58.49
Os08t0460000-01	Rice	extracellular	59.33	58.22
TraesCS7B01G084000.1	Wheat	plastid	58.85	58.02
TraesCS7D01G180200.1	Wheat	extracellular, vacuole	58.85	58.02
TraesCS2B01G090300.1	Wheat	extracellular	58.37	57.55
AT5G20630.1	Thale cress	extracellular, plasma membrane, vacuole	57.89	57.35
TraesCS2D01G073600.1	Wheat	extracellular	56.94	57.21
TraesCS2D01G073700.1	Wheat	extracellular	57.42	56.6
TraesCS2A01G075000.1	Wheat	extracellular	56.94	55.87
Zm00001d037513_P001	Maize	plastid	56.46	55.66
CDY27880	Canola	extracellular	55.5	54.72
CDY45077	Canola	extracellular	55.5	54.72
Bra020115.1-P	Field mustard	extracellular	55.5	54.72
EES17780	Sorghum	extracellular, vacuole	57.42	54.3
VIT_09s0002g01340.t01	Wine grape	extracellular, vacuole	63.64	53.63
Bra020114.1-P	Field mustard	extracellular, vacuole	55.98	53.42
CDY45079	Canola	extracellular, vacuole	55.98	53.42
GSMUA_Achr9P16110_001	Banana	plasma membrane, plastid, vacuole	58.85	48.05
GSMUA_Achr2P18710_001	Banana	extracellular	56.46	47.2
VIT_14s0060g00120.t01	Wine grape	extracellular	39.23	37.79
VIT_07s0005g02380.t01	Wine grape	extracellular	35.89	34.56
VIT_01s0026g00970.t01	Wine grape	extracellular	36.36	34.39
VIT_08s0007g03430.t01	Wine grape	cytosol	33.01	33.99
VIT_07s0005g02370.t01	Wine grape	extracellular	34.93	33.64
VIT_17s0000g05360.t01	Wine grape	endoplasmic reticulum, extracellular	35.89	32.89

Protein Annotations

EntrezGene:100259980	wikigene:100259980	Gene3D:2.60.120.10	MapMan:35.1	ProteinID:CCB59294	ProteinID:CCB59294.1
InterPro:Cupin_1	UniProt:F6HXW9	EMBL:FN596494	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0030145	GO:GO:0030312	GO:GO:0045735
GO:GO:0046872	InterPro:Germin	InterPro:IPR014710	EntrezGene:LOC100259980	wikigene:LOC100259980	PFAM:PF00190
PRINTS:PR00325	PANTHER:PTHR31238	PANTHER:PTHR31238:SF92	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	SMART:SM00835
SUPFAM:SSF51182	SignalP:SignalP-noTM	TIGR:TC65887	UniParc:UPI0001983D8C	ArrayExpress:VIT_09s0002g01320	EnsemblPlantsGene:VIT_09s0002g01320
EnsemblPlants:VIT_09s0002g01320.t01	unigene:Vvi.9477	RefSeq:XP_002274457	RefSeq:XP_002274457.1	SEG:seg	:

Description

No Description!

Coordinates

chr9:-:1099947..1100820

Molecular Weight (calculated)

22046.3 Da

IEP (calculated)

5.831

GRAVY (calculated)

0.196

Length

209 amino acids

Sequence
(BLAST)

001: MLHILALFSF LLVSSSHAAV QDFCVADLTA PQGPAGYSCK TPAEVTADDF VYSGLSQPGN TSSLFNAAIN TAFVDKFPGL NGLGLSMARA DLAPGGVVPM
101: HTHHGASETI LIAKGSITAG FISSDNTVYL KTLKEGDIMV FPQGLLHFQV NTGRTQAHFW VSFGSSNPGI QILSNALFSN NLPSELIEKT TFLDDDEVKR
201: LKALLGGSG

Best Arabidopsis Sequence Match ( AT1G72610.1 )
(BLAST)

001: MLRTIFLLSL LFALSNASVQ DFCVANLKRA ETPAGYPCIR PIHVKATDFV FSGLGTPGNT TNIINAAVTP AFAAQFPGLN GLGLSTARLD LAPKGVIPMH
101: THPGASEVLF VLTGSITAGF VSSANAVYVQ TLKPGQVMVF PQGLLHFQIN AGKSSASAVV TFNSANPGLQ ILDFALFANS LPTELVVGTT FLDATTVKKL
201: KGVLGGTG

Arabidopsis Description

GLP1Germin-like protein subfamily 3 member 1 [Source:UniProtKB/Swiss-Prot;Acc:P94040]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.