Factsheet for PGSC0003DMT400036428

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

extracellular: 22313117
extracellular: 28248230

msms PMID: 28248230 doi

E Elagamey, K Narula, A Sinha, PR Aggarwal, S Ghosh, N Chakraborty, S Chakraborty

National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. aggarwal.pooja28@yahoo.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. arunima35@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. gayatrinarula@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. nchakraborty@nipgr.ac.in., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. schakraborty@nipgr.ac.in., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. sgblackpearl@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. subhrac@hotmail.com.

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g123410.1.1	Tomato	nucleus	96.63	96.63
PGSC0003DMT400030317	Potato	extracellular	83.65	83.65
PGSC0003DMT400033858	Potato	extracellular	69.23	68.25
CDY51841	Canola	extracellular, plasma membrane, vacuole	67.31	66.35
Bra006567.1-P	Field mustard	extracellular, plasma membrane, vacuole	66.83	65.88
CDX70935	Canola	extracellular, vacuole	66.83	65.88
CDY45080	Canola	extracellular, plasma membrane, vacuole	65.38	64.45
Bra020113.1-P	Field mustard	extracellular, plasma membrane, vacuole	65.38	64.45
AT5G20630.1	Thale cress	extracellular, plasma membrane, vacuole	65.38	64.45
CDX92448	Canola	extracellular	64.9	63.98
Bra002316.1-P	Field mustard	extracellular	64.9	63.98
CDX85429	Canola	extracellular	64.9	63.98
CDY16549	Canola	extracellular	64.9	63.98
CDY22866	Canola	extracellular	64.9	63.98
VIT_09s0002g01320.t01	Wine grape	extracellular	60.58	60.29
TraesCS2B01G090300.1	Wheat	extracellular	61.06	59.91
VIT_09s0002g01330.t01	Wine grape	cytosol, extracellular, nucleus	28.37	59.6
TraesCS7A01G178300.1	Wheat	extracellular	60.58	59.43
TraesCS2D01G073700.1	Wheat	extracellular	60.58	59.43
VIT_18s0086g00590.t01	Wine grape	cytosol	35.1	59.35
VIT_18s0086g00410.t01	Wine grape	extracellular	59.62	59.33
TraesCS2A01G075000.1	Wheat	extracellular	60.58	59.15
TraesCS7B01G084000.1	Wheat	plastid	60.1	58.96
HORVU7Hr1G036720.1	Barley	extracellular	60.1	58.96
TraesCS7D01G180200.1	Wheat	extracellular, vacuole	60.1	58.96
Os08t0460000-01	Rice	extracellular	60.1	58.69
TraesCS2D01G073600.1	Wheat	extracellular	58.65	58.65
Zm00001d037513_P001	Maize	plastid	58.65	57.55
EES17780	Sorghum	extracellular, vacuole	59.62	56.11
Bra020115.1-P	Field mustard	extracellular	56.73	55.66
CDY27880	Canola	extracellular	56.73	55.66
CDY45077	Canola	extracellular	56.73	55.66
Bra020114.1-P	Field mustard	extracellular, vacuole	57.69	54.79
CDY45079	Canola	extracellular, vacuole	57.69	54.79
GSMUA_Achr9P16110_001	Banana	plasma membrane, plastid, vacuole	67.31	54.69
VIT_07s0005g05920.t01	Wine grape	extracellular	53.85	53.59
VIT_07s0005g05910.t01	Wine grape	extracellular	52.88	52.63
VIT_07s0005g05930.t01	Wine grape	extracellular	52.88	52.63
VIT_12s0059g00740.t01	Wine grape	cytosol	30.29	51.22
GSMUA_Achr2P18710_001	Banana	extracellular	59.62	49.6
VIT_09s0002g01340.t01	Wine grape	extracellular, vacuole	54.33	45.56
PGSC0003DMT400047065	Potato	cytosol, extracellular	34.13	33.81
PGSC0003DMT400047067	Potato	cytosol	34.13	33.65
PGSC0003DMT400061586	Potato	extracellular	34.13	33.49
PGSC0003DMT400063164	Potato	vacuole	34.62	32.73
PGSC0003DMT400063166	Potato	vacuole	33.65	32.26
PGSC0003DMT400058298	Potato	extracellular, vacuole	30.29	29.86

Protein Annotations

EntrezGene:102594953	Gene3D:2.60.120.10	MapMan:35.1	InterPro:Cupin_1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005576	GO:GO:0030145	GO:GO:0045735	GO:GO:0046872	InterPro:Germin
InterPro:Germin_Mn-BS	InterPro:IPR014710	UniProt:M1B3M1	PFAM:PF00190	EnsemblPlantsGene:PGSC0003DMG400014027	PGSC:PGSC0003DMG400014027
EnsemblPlants:PGSC0003DMT400036428	PRINTS:PR00325	ScanProsite:PS00725	PANTHER:PTHR31238	PANTHER:PTHR31238:SF2	InterPro:RmlC-like_jellyroll
InterPro:RmlC_Cupin_sf	SMART:SM00835	SUPFAM:SSF51182	SignalP:SignalP-noTM	UniParc:UPI0002967C22	RefSeq:XP_006342915.1
SEG:seg	:	:	:	:	:

Description

Germin [Source:PGSC_GENE;Acc:PGSC0003DMG400014027]

Coordinates

chr3:-:61505299..61506223

Molecular Weight (calculated)

21520.9 Da

IEP (calculated)

6.237

GRAVY (calculated)

0.541

Length

208 amino acids

Sequence
(BLAST)

001: MFKFLFLLAI LILSSDAAVQ DFCVADLKAP ESPSGYSCKS VTNVTVDDFV FSGLSAAGNT ASIIKAAVTP AFAAQFPGVN GLGISAARLD LAAGGVIPFH
101: THPGASEILL VVQGSITAGF VSSANSVYLK TLKKGDLMVF PQGLLHFQVS DAGYTSVGYV FFSSSNPGLQ ITDFALFAND LPTKLVGATT FLDEATIKKL
201: KGVLGGTN

Best Arabidopsis Sequence Match ( AT5G20630.1 )
(BLAST)

001: MKMIIQIFFI ISLISTISFA SVQDFCVADP KGPQSPSGYS CKNPDQVTEN DFAFTGLGTA GNTSNIIKAA VTPAFAPAYA GINGLGVSLA RLDLAGGGVI
101: PLHTHPGASE VLVVIQGTIC AGFISSANKV YLKTLNRGDS MVFPQGLLHF QLNSGKGPAL AFVAFGSSSP GLQILPFALF ANDLPSELVE ATTFLSDAEV
201: KKLKGVLGGT N

Arabidopsis Description

GER3Germin-like protein subfamily 3 member 3 [Source:UniProtKB/Swiss-Prot;Acc:P94072]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.