Factsheet for PGSC0003DMT400063166

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 8
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g113580.1.1	Tomato	vacuole	94.01	94.01
PGSC0003DMT400063164	Potato	vacuole	86.18	85.0
CDY19265	Canola	extracellular	62.21	63.08
CDY26706	Canola	extracellular	62.21	63.08
Bra031058.1-P	Field mustard	extracellular	61.75	62.62
Bra025704.1-P	Field mustard	extracellular	61.29	62.15
CDY21688	Canola	extracellular	61.29	62.15
CDX81907	Canola	extracellular	60.83	61.68
AT1G18980.1	Thale cress	extracellular	61.75	60.91
VIT_17s0000g05360.t01	Wine grape	endoplasmic reticulum, extracellular	63.59	60.53
AT1G18970.1	Thale cress	extracellular, vacuole	58.53	57.73
Zm00001d034514_P001	Maize	extracellular	53.0	50.44
Os03t0804700-00	Rice	plastid	52.07	50.22
TraesCS5B01G462200.1	Wheat	extracellular, vacuole	53.0	50.0
TraesCS5A01G453200.1	Wheat	extracellular	52.53	49.57
TraesCS5D01G464000.1	Wheat	extracellular	52.07	49.13
PGSC0003DMT400047065	Potato	cytosol, extracellular	46.54	48.1
EER93258	Sorghum	endoplasmic reticulum, extracellular	51.61	48.07
Os03t0804500-01	Rice	extracellular	51.61	48.07
PGSC0003DMT400047067	Potato	cytosol	46.54	47.87
AT1G74820.1	Thale cress	extracellular	47.93	45.81
CDX68163	Canola	extracellular	45.62	45.21
Bra003784.1-P	Field mustard	extracellular	45.16	44.75
CDX85858	Canola	extracellular	45.16	42.79
HORVU5Hr1G109190.1	Barley	extracellular, mitochondrion, vacuole	52.53	39.18
PGSC0003DMT400061586	Potato	extracellular	37.79	38.68
PGSC0003DMT400058298	Potato	extracellular, vacuole	35.02	36.02
PGSC0003DMT400033858	Potato	extracellular	35.02	36.02
PGSC0003DMT400030317	Potato	extracellular	32.72	34.13
PGSC0003DMT400036428	Potato	extracellular	32.26	33.65

Protein Annotations

EntrezGene:102600664	Gene3D:2.60.120.10	MapMan:35.1	InterPro:Cupin_1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005576	GO:GO:0030145	GO:GO:0045735	GO:GO:0046872	InterPro:Germin
InterPro:IPR014710	UniProt:M1CA64	PFAM:PF00190	EnsemblPlantsGene:PGSC0003DMG400024569	PGSC:PGSC0003DMG400024569	EnsemblPlants:PGSC0003DMT400063166
PRINTS:PR00325	PANTHER:PTHR31238	PANTHER:PTHR31238:SF46	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	SMART:SM00835
SUPFAM:SSF51182	SignalP:SignalP-noTM	UniParc:UPI0002954162	RefSeq:XP_006344981.1	SEG:seg	:

Description

Rhicadhesin receptor [Source:PGSC_GENE;Acc:PGSC0003DMG400024569]

Coordinates

chr3:-:53467366..53468413

Molecular Weight (calculated)

23203.2 Da

IEP (calculated)

6.785

GRAVY (calculated)

0.285

Length

217 amino acids

Sequence
(BLAST)

001: MAIRVTLLLV ILVVLPFPSH CADPDPLQDF CVGVLNDTST SINGFPCKPA SQVTSNDFFF DGLTKEGNTD NVFGFTATVG NVLAFPGLNT LGLSMNRVDF
101: APGGLNPPHS HPRATETGVV IKGKLYVGFL TTNNVLHSKI LTVGEMFVVP RGLVHFQMNV GKEKAMTITA FNSHLPGAVV LPTTLFASMP PIPNDVLTKT
201: FQVEASVIDD IKSKFGS

Best Arabidopsis Sequence Match ( AT1G18980.1 )
(BLAST)

001: MTTLQISSSL FRSFLLVICV FVIPSLSSDS DPLQDFCVGD LKASPSINGF PCKSSVSASD FFFSGLGGPL NTSTPNGVAV SPANVLTFPG LNTLGLSMNN
101: VEFAPGGVNP PHSHPRATEA GVVIEGSVFV GFLTTNNTLF SKVLNAGEMF VVPRGLVHFQ WNVGKVKARL ITSFNSQLPG SAVLPSTLFG SNPTIPNAVL
201: TKTFRTDDVT VNKLKSKFAV

Arabidopsis Description

At1g18980 [Source:UniProtKB/TrEMBL;Acc:Q29PR5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.