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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 7
  • endoplasmic reticulum 5
  • vacuole 6
  • plasma membrane 5
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra003784.1-P Field mustard extracellular 87.34 91.32
CDX68163 Canola extracellular 87.34 91.32
AT1G74820.1 Thale cress extracellular 72.49 73.13
CDY26706 Canola extracellular 49.78 53.27
CDY19265 Canola extracellular 49.78 53.27
CDY21688 Canola extracellular 49.34 52.8
CDX81907 Canola extracellular 49.34 52.8
PGSC0003DMT400063164 Potato vacuole 46.29 48.18
Solyc03g113570.1.1 Tomato vacuole 45.85 47.73
PGSC0003DMT400063166 Potato vacuole 42.79 45.16
Solyc03g113580.1.1 Tomato vacuole 42.79 45.16
VIT_17s0000g05360.t01 Wine grape endoplasmic reticulum, extracellular 41.05 41.23
Os03t0804700-00 Rice plastid 39.74 40.44
TraesCS5D01G464000.1 Wheat extracellular 39.74 39.57
TraesCS5B01G462200.1 Wheat extracellular, vacuole 39.74 39.57
TraesCS5A01G453200.1 Wheat extracellular 39.74 39.57
Zm00001d034514_P001 Maize extracellular 37.99 38.16
CDY18833 Canola extracellular 36.24 38.07
CDY05213 Canola extracellular 35.81 37.61
CDY47579 Canola extracellular 31.0 37.37
CDY49987 Canola extracellular 34.93 36.7
CDX74123 Canola extracellular 34.93 36.7
Os03t0804500-01 Rice extracellular 37.12 36.48
EER93258 Sorghum endoplasmic reticulum, extracellular 37.12 36.48
CDY11392 Canola extracellular 34.5 35.91
CDX89983 Canola extracellular, vacuole 34.06 35.78
CDX76609 Canola extracellular 34.06 35.45
CDY15231 Canola extracellular, vacuole 33.62 35.32
CDY06361 Canola extracellular 32.75 34.72
CDX93502 Canola extracellular 33.62 34.53
CDY22633 Canola extracellular 32.31 34.26
CDY31080 Canola extracellular 32.75 34.25
CDY50897 Canola extracellular 32.75 33.94
CDY20692 Canola extracellular 32.31 33.64
CDY19762 Canola extracellular 31.0 32.72
CDX87040 Canola extracellular 31.0 32.72
CDX80572 Canola extracellular 31.0 32.57
CDY41321 Canola extracellular 31.88 32.3
CDY22215 Canola extracellular 31.88 32.3
CDY61117 Canola extracellular 30.57 32.11
CDY45080 Canola extracellular, plasma membrane, vacuole 29.26 31.75
CDY05519 Canola extracellular 30.13 31.65
HORVU5Hr1G109190.1 Barley extracellular, mitochondrion, vacuole 40.17 31.62
CDY51841 Canola extracellular, plasma membrane, vacuole 28.82 31.28
CDY27880 Canola extracellular 28.82 31.13
CDY45077 Canola extracellular 28.82 31.13
CDY11164 Canola extracellular, vacuole 27.95 30.92
CDY22866 Canola extracellular 28.38 30.81
CDX85429 Canola extracellular 28.38 30.81
CDX92448 Canola extracellular 28.38 30.81
CDY16549 Canola extracellular 28.38 30.81
CDX70935 Canola extracellular, vacuole 28.38 30.81
CDX68260 Canola extracellular, vacuole 27.51 30.43
CDY05327 Canola vacuole 25.76 30.41
CDX72929 Canola vacuole 28.38 29.95
CDX96421 Canola vacuole 28.38 29.95
CDY34891 Canola vacuole 24.02 28.95
CDY45079 Canola extracellular, vacuole 27.07 28.31
CDY07800 Canola vacuole 23.14 27.75
CDX82141 Canola vacuole 21.4 22.17
Protein Annotations
Gene3D:2.60.120.10MapMan:35.1GO:A0A078DEX5EnsemblPlants:CDX85858ProteinID:CDX85858ProteinID:CDX85858.1
ncoils:CoilInterPro:Cupin_1GO:GO:0003674GO:GO:0005488GO:GO:0030145GO:GO:0045735
EnsemblPlantsGene:GSBRNA2T00143650001InterPro:GerminInterPro:IPR014710PFAM:PF00190PRINTS:PR00325PANTHER:PTHR31238
PANTHER:PTHR31238:SF46InterPro:RmlC-like_jellyrollInterPro:RmlC_Cupin_sfSMART:SM00835SUPFAM:SSF51182TMHMM:TMhelix
UniParc:UPI0004EC0737SEG:seg::::
Description
BnaC06g22760D
Coordinates
chrLK031843:-:352031..352720
Molecular Weight (calculated)
24714.0 Da
IEP (calculated)
8.077
GRAVY (calculated)
0.250
Length
229 amino acids
Sequence
(BLAST)
001: MVTYLHHNSL AITTFIYRVS VLFALCITLF TNPALSGYNN PLQDFCVADL QATPSNTGYP CKSQVTSEDF FYSGLSTPLN TSNPKGVAAN RANLMTFPGL
101: NTMGISMYNV AVAAGVANPP HSHPGVTEAG VVVEGLVLIG FLTNNYTLYS KVAGPGDMFV IPPGLIHYEM NVGKTEARLL TVVASEWPSE VLVPHTLFLA
201: KPAIPDFVLK KIFKTDGKTI NMLRTKLAN
Best Arabidopsis Sequence Match ( AT1G74820.1 )
(BLAST)
001: MAHISQISSF LSIVLIFLAL CITLFTNPTL SLPALKLNPF QDFCVADLQA TPTNSGYPCK SQVTSEDFFY SGLNTPLNTS NPKGIAANPA NLLTFPGLNT
101: LGISMYNVAI APGGYNQPHS HPGVTEAGVV IEGSVLVGFL TTNYTLYSKV IGPGDMFVIP PGLIHYEGNV GKTQCRLLTV VADDLPSEVG VPHTLLATKP
201: AIPNEVLISA FKADSKTINM LRSKFTA
Arabidopsis Description
Germin-like protein subfamily T member 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9S772]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.