Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 8
- vacuole 4
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX68163 | Canola | extracellular | 75.77 | 78.54 |
| Bra003784.1-P | Field mustard | extracellular | 74.89 | 77.63 |
| CDX85858 | Canola | extracellular | 73.13 | 72.49 |
| AT1G18980.1 | Thale cress | extracellular | 51.98 | 53.64 |
| AT1G18970.1 | Thale cress | extracellular, vacuole | 50.22 | 51.82 |
| PGSC0003DMT400063164 | Potato | vacuole | 47.14 | 48.64 |
| PGSC0003DMT400063166 | Potato | vacuole | 45.81 | 47.93 |
| Solyc03g113570.1.1 | Tomato | vacuole | 46.26 | 47.73 |
| Solyc03g113580.1.1 | Tomato | vacuole | 44.93 | 47.0 |
| VIT_17s0000g05360.t01 | Wine grape | endoplasmic reticulum, extracellular | 43.17 | 42.98 |
| Os03t0804700-00 | Rice | plastid | 40.97 | 41.33 |
| Zm00001d034514_P001 | Maize | extracellular | 40.53 | 40.35 |
| TraesCS5A01G453200.1 | Wheat | extracellular | 40.53 | 40.0 |
| TraesCS5B01G462200.1 | Wheat | extracellular, vacuole | 40.53 | 40.0 |
| AT3G05930.1 | Thale cress | extracellular | 38.33 | 39.73 |
| TraesCS5D01G464000.1 | Wheat | extracellular | 40.09 | 39.57 |
| EER93258 | Sorghum | endoplasmic reticulum, extracellular | 40.09 | 39.06 |
| Os03t0804500-01 | Rice | extracellular | 40.09 | 39.06 |
| AT1G09560.1 | Thale cress | extracellular | 36.12 | 37.44 |
| AT1G02335.1 | Thale cress | extracellular, vacuole | 34.8 | 36.07 |
| AT3G62020.1 | Thale cress | extracellular, vacuole | 34.8 | 35.91 |
| AT1G72610.1 | Thale cress | extracellular, vacuole | 30.4 | 33.17 |
| AT5G26700.1 | Thale cress | extracellular, vacuole | 30.84 | 32.86 |
| HORVU5Hr1G109190.1 | Barley | extracellular, mitochondrion, vacuole | 41.41 | 32.3 |
| AT5G20630.1 | Thale cress | extracellular, plasma membrane, vacuole | 29.96 | 32.23 |
| AT1G10460.1 | Thale cress | extracellular, vacuole | 26.87 | 28.11 |
| AT3G10080.2 | Thale cress | mitochondrion | 32.16 | 24.5 |
Protein Annotations
| Gene3D:2.60.120.10 | MapMan:35.1 | EntrezGene:843821 | ProteinID:AAD55294.1 | ProteinID:AAG51910.1 | ProteinID:AEE35635.1 |
| ArrayExpress:AT1G74820 | EnsemblPlantsGene:AT1G74820 | RefSeq:AT1G74820 | TAIR:AT1G74820 | RefSeq:AT1G74820-TAIR-G | EnsemblPlants:AT1G74820.1 |
| TAIR:AT1G74820.1 | InterPro:Cupin_1 | EMBL:DQ446430 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005576 | GO:GO:0005618 | GO:GO:0005623 | GO:GO:0030145 | GO:GO:0030312 | GO:GO:0045735 |
| GO:GO:0046872 | GO:GO:0048046 | InterPro:Germin | InterPro:IPR014710 | RefSeq:NP_177620.1 | PFAM:PF00190 |
| PO:PO:0007616 | PO:PO:0009031 | PRINTS:PR00325 | PANTHER:PTHR31238 | PANTHER:PTHR31238:SF46 | UniProt:Q9S772 |
| InterPro:RmlC-like_jellyroll | InterPro:RmlC_Cupin_sf | SMART:SM00835 | SUPFAM:SSF51182 | TMHMM:TMhelix | UniParc:UPI000012B800 |
Description
Germin-like protein subfamily T member 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9S772]
Coordinates
chr1:-:28111808..28112579
Molecular Weight (calculated)
24128.3 Da
IEP (calculated)
6.661
GRAVY (calculated)
0.306
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MAHISQISSF LSIVLIFLAL CITLFTNPTL SLPALKLNPF QDFCVADLQA TPTNSGYPCK SQVTSEDFFY SGLNTPLNTS NPKGIAANPA NLLTFPGLNT
101: LGISMYNVAI APGGYNQPHS HPGVTEAGVV IEGSVLVGFL TTNYTLYSKV IGPGDMFVIP PGLIHYEGNV GKTQCRLLTV VADDLPSEVG VPHTLLATKP
201: AIPNEVLISA FKADSKTINM LRSKFTA
101: LGISMYNVAI APGGYNQPHS HPGVTEAGVV IEGSVLVGFL TTNYTLYSKV IGPGDMFVIP PGLIHYEGNV GKTQCRLLTV VADDLPSEVG VPHTLLATKP
201: AIPNEVLISA FKADSKTINM LRSKFTA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.