Factsheet for Zm00001d034514_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

extracellular: 16602704
extracellular: 18088330
extracellular: 20408568
extracellular: 22192489

msms PMID: 22192489 doi

K Witzel, M Shahzad, A Matros, HP Mock, KH Mühling

Institute of Plant Nutrition and Soil Science, Christian Albrechts University, Hermann-Rodewald-Strasse 2, 24118 Kiel, Germany. khmuehling@plantnutrition.uni-kiel.de.

msms PMID: 18088330 doi

S Alvarez, EL Marsh, SG Schroeder, DP Schachtman

Donald Danforth Plant Science Center, 975 North Warson Rd, St Louis, MO, 63132, USA.

msms PMID: 16602704 doi

S Alvarez, JQ Goodger, EL Marsh, S Chen, VS Asirvatham, DP Schachtman

Donald Danforth Plant Science Center, 975 North Warson Road, Saint Louis, Missouri 63132, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93258	Sorghum	endoplasmic reticulum, extracellular	86.4	84.55
TraesCS5B01G462200.1	Wheat	extracellular, vacuole	70.18	69.57
TraesCS5A01G453200.1	Wheat	extracellular	70.18	69.57
TraesCS5D01G464000.1	Wheat	extracellular	69.74	69.13
Os03t0804500-01	Rice	extracellular	69.3	67.81
HORVU5Hr1G109190.1	Barley	extracellular, mitochondrion, vacuole	70.61	55.33
PGSC0003DMT400063166	Potato	vacuole	50.44	53.0
PGSC0003DMT400063164	Potato	vacuole	50.44	52.27
Solyc03g113570.1.1	Tomato	vacuole	50.0	51.82
Solyc03g113580.1.1	Tomato	vacuole	49.12	51.61
CDY19265	Canola	extracellular	48.25	51.4
CDY26706	Canola	extracellular	47.81	50.93
Bra031058.1-P	Field mustard	extracellular	47.81	50.93
CDX81907	Canola	extracellular	47.37	50.47
Bra025704.1-P	Field mustard	extracellular	47.37	50.47
CDY21688	Canola	extracellular	46.93	50.0
VIT_17s0000g05360.t01	Wine grape	endoplasmic reticulum, extracellular	50.0	50.0
AT1G18970.1	Thale cress	extracellular, vacuole	48.25	50.0
AT1G18980.1	Thale cress	extracellular	47.37	49.09
Zm00001d033583_P001	Maize	extracellular	46.93	47.56
Zm00001d043710_P001	Maize	extracellular, vacuole	45.18	46.82
Zm00001d008210_P002	Maize	extracellular	42.98	45.79
Zm00001d038137_P001	Maize	extracellular	44.3	44.49
Zm00001d042082_P001	Maize	extracellular	39.47	43.27
Zm00001d040519_P001	Maize	extracellular	40.79	42.66
Zm00001d011853_P001	Maize	extracellular	42.11	42.48
CDX68163	Canola	extracellular	40.35	42.01
Zm00001d018954_P002	Maize	extracellular	42.11	41.56
Bra003784.1-P	Field mustard	extracellular	39.47	41.1
AT1G74820.1	Thale cress	extracellular	40.35	40.53
Zm00001d037513_P001	Maize	plastid	35.53	38.21
CDX85858	Canola	extracellular	38.16	37.99
Zm00001d032047_P001	Maize	cytosol	29.82	35.23
Zm00001d027890_P001	Maize	extracellular, vacuole	34.65	34.35
Zm00001d016697_P001	Maize	extracellular	35.09	34.19
Zm00001d032048_P001	Maize	cytosol	15.35	27.13

Protein Annotations

Gene3D:2.60.120.10	MapMan:35.1	UniProt:A0A1D6L886	InterPro:Cupin_1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005576	GO:GO:0030145	GO:GO:0045735	GO:GO:0046872	InterPro:Germin
InterPro:Germin_Mn-BS	InterPro:IPR014710	ProteinID:ONM10455.1	PFAM:PF00190	PRINTS:PR00325	ScanProsite:PS00725
PANTHER:PTHR31238	PANTHER:PTHR31238:SF46	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	SMART:SM00835	SUPFAM:SSF51182
SignalP:SignalP-noTM	UniParc:UPI000221AD04	EnsemblPlantsGene:Zm00001d034514	EnsemblPlants:Zm00001d034514_P001	EnsemblPlants:Zm00001d034514_T001	SEG:seg

Description

Germin-like protein subfamily T member 1

Coordinates

chr1:+:295309847..295310533

Molecular Weight (calculated)

23723.3 Da

IEP (calculated)

6.506

GRAVY (calculated)

0.135

Length

228 amino acids

Sequence
(BLAST)

001: MSKPASSSFL LLLLSATLLA TVCRADPDPV QDFCVAVAPG GHNNASSSSS TYPGFPCKPA STVVSDDFFF AAHAGGASTD NPMGAGVTPG NVEAFPGLNT
101: LGLSINRVDL APGGVNPLHT HPRSAELVHV EAGEMLVGFV STEGRFYSKV VRAGESFVIP RGMVHFQYNV GKGAARAMTV FNSQLPGVVL AAQTLFGADP
201: EIPDDVLAKS FQVDADTIKL LKSKFQKG

Best Arabidopsis Sequence Match ( AT1G18970.1 )
(BLAST)

001: MATLQIPSAL LRSFLLMFCL FVIPSLSSDS DPLQDFCVGD LKASASINGF PCKSAVSASD FFYSGLGGPL DTSNPNGVTV APANVLTFPG LNTLGISMNN
101: VELAPGGVNP PHLHPRATEV GTVIEGSVFV GFLSTNNTLF SKVLNAGEAF VIPRGLVHFQ WNVGQVKARM ITAFNSQLPG AVVLPSTLFG SKPEIPNAVL
201: TRAFRTDDTT VQNLKSKFAV

Arabidopsis Description

GLP1Germin-like protein subfamily T member 1 [Source:UniProtKB/Swiss-Prot;Acc:P92995]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.