Factsheet for Zm00001d016697_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES06908	Sorghum	extracellular, vacuole	89.32	88.56
Os02t0532500-01	Rice	extracellular	83.33	85.15
TraesCS6A01G028700.1	Wheat	extracellular, unclear	82.91	85.09
TraesCS6D01G033100.1	Wheat	golgi	82.48	84.65
TraesCS6B01G041100.1	Wheat	extracellular	82.48	84.65
HORVU6Hr1G005420.1	Barley	extracellular	80.77	82.89
VIT_08s0007g03430.t01	Wine grape	cytosol	46.58	53.69
KRG90715	Soybean	nucleus	47.86	53.59
PGSC0003DMT400061586	Potato	extracellular	47.44	52.36
Solyc11g006980.1.1	Tomato	extracellular	46.58	51.42
KRH36030	Soybean	extracellular	40.17	50.81
KRH30838	Soybean	extracellular	47.86	49.56
Bra034093.1-P	Field mustard	extracellular	47.44	49.12
CDY41321	Canola	extracellular	47.44	49.12
KRH32736	Soybean	extracellular, vacuole	47.44	49.12
CDY22215	Canola	extracellular	47.01	48.67
Zm00001d038137_P001	Maize	extracellular	38.46	39.65
Zm00001d008210_P002	Maize	extracellular	35.9	39.25
Zm00001d018954_P002	Maize	extracellular	38.46	38.96
Zm00001d040519_P001	Maize	extracellular	35.9	38.53
Zm00001d011853_P001	Maize	extracellular	37.18	38.5
Zm00001d042082_P001	Maize	extracellular	33.33	37.5
Zm00001d033583_P001	Maize	extracellular	35.9	37.33
AT3G10080.2	Thale cress	mitochondrion	47.44	37.25
Zm00001d034514_P001	Maize	extracellular	34.19	35.09
Zm00001d037513_P001	Maize	plastid	30.77	33.96
Zm00001d027890_P001	Maize	extracellular, vacuole	32.91	33.48
Zm00001d043710_P001	Maize	extracellular, vacuole	31.2	33.18
Zm00001d032047_P001	Maize	cytosol	24.36	29.53
Zm00001d032048_P001	Maize	cytosol	15.38	27.91

Protein Annotations

Gene3D:2.60.120.10	MapMan:35.1	UniProt:A0A1D6H9X6	ProteinID:AQK71509.1	ncoils:Coil	InterPro:Cupin_1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005576	GO:GO:0030145	GO:GO:0045735
GO:GO:0046872	InterPro:Germin	InterPro:IPR014710	PFAM:PF00190	PRINTS:PR00325	PANTHER:PTHR31238
PANTHER:PTHR31238:SF8	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	SMART:SM00835	SUPFAM:SSF51182	SignalP:SignalP-noTM
UniParc:UPI0001BA4460	EnsemblPlantsGene:Zm00001d016697	EnsemblPlants:Zm00001d016697_P001	EnsemblPlants:Zm00001d016697_T001	SEG:seg	:

Description

Germin-like protein subfamily 3 member 2

Coordinates

chr5:-:172838793..172839497

Molecular Weight (calculated)

24579.4 Da

IEP (calculated)

7.058

GRAVY (calculated)

0.057

Length

234 amino acids

Sequence
(BLAST)

001: MATRHLLLLL LAALLPAAAT ADPDAVQDYC VPDTGGGRGR GRAVDLALLP SYPCRSPANL TAADFAFAGV RAAGNFSADT GFAGVSVTPA QFPALHTLGV
101: SFARADLSAA GGVNPPHYHP RATETALVLA GRVYAGFVDS GGRVFAKVLE KGEVMVFPRA MVHFQMNVGD EPATVYGTFN SENPGIVRIP ATVFGSGIKD
201: AVLERAFGLE PEELRRLQKR FGPPPKTKTA EMDD

Best Arabidopsis Sequence Match ( AT3G10080.2 )
(BLAST)

001: MYRPNHSHNQ NHISKRGFSF GTKTHTLISQ TKFWLIKSNH LNQSLIYPHQ IYICLFKPDV TQLFFTWTSS KMEANTLFLL KALCLLCFNV CFTLASDPDP
101: IQDFCIPKPV TSPYHDHHFS TNLPCKNSSE VTTEDFVFSG LKTAGNFTET GFATVPVGPE NFPGLNTLGI SFVRADLKPG SINPPHYHPR ATEVAHLVKG
201: RVYSGFVDSN NKVYAKVMEE GEMMVYPKGL VHFQMNVGDV TATIVGGLNS QNPGIQKIPS VVFGSGINEE LLMKAFGLSL KQIGTLKKRF DPVMSNEH

Arabidopsis Description

RmlC-like cupins superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSI8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.