Factsheet for Bra034093.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41321	Canola	extracellular	98.67	98.67
CDY22215	Canola	extracellular	98.23	98.23
AT3G10080.2	Thale cress	mitochondrion	88.05	66.78
KRH30838	Soybean	extracellular	63.72	63.72
KRH32736	Soybean	extracellular, vacuole	61.5	61.5
VIT_08s0007g03430.t01	Wine grape	cytosol	51.77	57.64
TraesCS6D01G033100.1	Wheat	golgi	49.56	49.12
TraesCS6B01G041100.1	Wheat	extracellular	49.56	49.12
Os02t0532500-01	Rice	extracellular	49.12	48.47
TraesCS6A01G028700.1	Wheat	extracellular, unclear	48.23	47.81
HORVU6Hr1G005420.1	Barley	extracellular	48.23	47.81
EES06908	Sorghum	extracellular, vacuole	49.56	47.46
Zm00001d016697_P001	Maize	extracellular	49.12	47.44
Bra031058.1-P	Field mustard	extracellular	38.94	41.12
Bra025704.1-P	Field mustard	extracellular	37.61	39.72
Bra009907.1-P	Field mustard	cytosol	30.53	37.5
Bra036586.1-P	Field mustard	extracellular	35.84	37.33
Bra031671.1-P	Field mustard	extracellular	35.4	37.04
Bra020014.1-P	Field mustard	extracellular	35.4	35.87
Bra020528.1-P	Field mustard	extracellular	34.51	35.78
Bra033314.1-P	Field mustard	extracellular, vacuole	34.07	35.32
Bra030785.1-P	Field mustard	extracellular	34.07	35.0
Bra020115.1-P	Field mustard	extracellular	32.74	34.91
Bra006567.1-P	Field mustard	extracellular, plasma membrane, vacuole	32.3	34.6
Bra020113.1-P	Field mustard	extracellular, plasma membrane, vacuole	31.86	34.12
Bra007652.1-P	Field mustard	extracellular	33.19	34.09
Bra003784.1-P	Field mustard	extracellular	32.74	33.79
Bra002316.1-P	Field mustard	extracellular	31.42	33.65
Bra031430.1-P	Field mustard	extracellular	27.88	33.51
Bra040244.1-P	Field mustard	extracellular	31.86	33.03
Bra003874.1-P	Field mustard	extracellular	30.09	32.85
Bra001173.1-P	Field mustard	extracellular, vacuole	31.42	32.57
Bra020798.1-P	Field mustard	extracellular	30.97	32.26
Bra016047.1-P	Field mustard	vacuole	30.53	31.8
Bra020114.1-P	Field mustard	extracellular, vacuole	30.53	31.51
Bra031713.1-P	Field mustard	vacuole	25.22	30.0

Protein Annotations

Gene3D:2.60.120.10	MapMan:35.1	EnsemblPlantsGene:Bra034093	EnsemblPlants:Bra034093.1	EnsemblPlants:Bra034093.1-P	InterPro:Cupin_1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005576	GO:GO:0030145	GO:GO:0045735
GO:GO:0046872	InterPro:Germin	InterPro:IPR014710	UniProt:M4EZ50	PFAM:PF00190	PRINTS:PR00325
PANTHER:PTHR31238	PANTHER:PTHR31238:SF48	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	SMART:SM00835	SUPFAM:SSF51182
SignalP:SignalP-noTM	UniParc:UPI00025441B2	:	:	:	:

Description

AT3G10080 (E=3e-116) | germin-like protein, putative

Coordinates

chrA01:+:27500210..27500890

Molecular Weight (calculated)

24721.9 Da

IEP (calculated)

7.253

GRAVY (calculated)

-0.042

Length

226 amino acids

Sequence
(BLAST)

001: MEANTMFLTK ALLLICFRVW FTLASDPDPI QDFCIPKPIT SPHHHPFSTN LPCKNSSELT TEDFIFSGFK TPGNFSDTGL ATVPVNPTTF PGLNTLGLSF
101: VRADLKPGAI NPPHYHPRAT EVAHVVKGRV YSGFVDSNNK VYAKVMEEGE MMVYPKGLVH FQMNVGDVTA TILGGLNSQS PGIQKIPSVV FGSGINEELL
201: VKAFGLSLEQ IGTLKKRFNP VMSNEH

Best Arabidopsis Sequence Match ( AT3G10080.2 )
(BLAST)

001: MYRPNHSHNQ NHISKRGFSF GTKTHTLISQ TKFWLIKSNH LNQSLIYPHQ IYICLFKPDV TQLFFTWTSS KMEANTLFLL KALCLLCFNV CFTLASDPDP
101: IQDFCIPKPV TSPYHDHHFS TNLPCKNSSE VTTEDFVFSG LKTAGNFTET GFATVPVGPE NFPGLNTLGI SFVRADLKPG SINPPHYHPR ATEVAHLVKG
201: RVYSGFVDSN NKVYAKVMEE GEMMVYPKGL VHFQMNVGDV TATIVGGLNS QNPGIQKIPS VVFGSGINEE LLMKAFGLSL KQIGTLKKRF DPVMSNEH

Arabidopsis Description

RmlC-like cupins superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSI8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.