Factsheet for Bra009907.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY61117	Canola	extracellular	98.37	83.03
Bra020528.1-P	Field mustard	extracellular	90.22	76.15
Bra036586.1-P	Field mustard	extracellular	89.13	75.58
AT5G26700.1	Thale cress	extracellular, vacuole	84.24	72.77
Bra040244.1-P	Field mustard	extracellular	63.04	53.21
Bra020798.1-P	Field mustard	extracellular	62.5	53.0
Bra001173.1-P	Field mustard	extracellular, vacuole	62.5	52.75
Bra031671.1-P	Field mustard	extracellular	59.78	50.93
Bra031430.1-P	Field mustard	extracellular	50.54	49.47
Bra007652.1-P	Field mustard	extracellular	57.07	47.73
Bra030785.1-P	Field mustard	extracellular	57.07	47.73
Bra020014.1-P	Field mustard	extracellular	57.61	47.53
Bra033314.1-P	Field mustard	extracellular, vacuole	55.43	46.79
Bra025704.1-P	Field mustard	extracellular	42.39	36.45
Bra031058.1-P	Field mustard	extracellular	41.85	35.98
Bra006567.1-P	Field mustard	extracellular, plasma membrane, vacuole	38.59	33.65
Bra020113.1-P	Field mustard	extracellular, plasma membrane, vacuole	38.59	33.65
Bra002316.1-P	Field mustard	extracellular	38.04	33.18
Bra003874.1-P	Field mustard	extracellular	36.41	32.37
Bra020115.1-P	Field mustard	extracellular	36.41	31.6
Bra020114.1-P	Field mustard	extracellular, vacuole	36.41	30.59
Bra034093.1-P	Field mustard	extracellular	37.5	30.53
Bra016047.1-P	Field mustard	vacuole	35.87	30.41
Bra031713.1-P	Field mustard	vacuole	30.43	29.47
Bra003784.1-P	Field mustard	extracellular	32.07	26.94

Protein Annotations

Gene3D:2.60.120.10	MapMan:35.1	EnsemblPlantsGene:Bra009907	EnsemblPlants:Bra009907.1	EnsemblPlants:Bra009907.1-P	InterPro:Cupin_1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005576	GO:GO:0030145	GO:GO:0045735
GO:GO:0046872	InterPro:Germin	InterPro:Germin_Mn-BS	InterPro:IPR014710	UniProt:M4D0A9	PFAM:PF00190
PRINTS:PR00325	ScanProsite:PS00725	PANTHER:PTHR31238	PANTHER:PTHR31238:SF18	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf
SMART:SM00835	SUPFAM:SSF51182	UniParc:UPI000253F425	SEG:seg	:	:

Description

AT5G26700 (E=2e-075) | germin-like protein, putative

Coordinates

chrA06:-:17993003..17993557

Molecular Weight (calculated)

19815.0 Da

IEP (calculated)

10.249

GRAVY (calculated)

-0.033

Length

184 amino acids

Sequence
(BLAST)

001: MTNEAVKVNG YTCKDSTQVT PEHFYFQGLA TAAAASNTST GAVVTGATVE KLPGLNTLGL SMSRIDYAPN GLNPPHIHPR ASEIIFVLEG QLYVGFVTTA
101: GKLVAKYINK GDVFVFPKGL LHFQKNIAKS APASVIAAFD SQLPGTQSLV SSLFGALPED ILVKSFQFKP KQVKRIKSRY QPKK

Best Arabidopsis Sequence Match ( AT5G26700.1 )
(BLAST)

001: MASFATHLVV VVTMLFVAMA SAEMLQDVCV ADLSNAVKVN GYTCKDSTQI TPEDFYFKGL ANIAATNTST GSVVTGANVE KLPGLNTLGL SMSRIDYAPN
101: GLNPPHVHPR ASEIIFVLEG QLYVGFVTTA GKLIAKNLNK GDVFTFPKGL IHFQKNIANS PASVLAAFDS QLPGTQSLVA SLFGALPDDI LAKSFQLKHK
201: QVKKIKLRYA PKK

Arabidopsis Description

Probable germin-like protein subfamily 2 member 5 [Source:UniProtKB/Swiss-Prot;Acc:O65252]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.