Factsheet for Zm00001d018954_P002

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

extracellular: 20408568
extracellular: 22192489

msms PMID: 22192489 doi

K Witzel, M Shahzad, A Matros, HP Mock, KH Mühling

Institute of Plant Nutrition and Soil Science, Christian Albrechts University, Hermann-Rodewald-Strasse 2, 24118 Kiel, Germany. khmuehling@plantnutrition.uni-kiel.de.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95948	Sorghum	extracellular	83.12	83.12
Os05t0277500-01	Rice	extracellular	74.89	78.28
TraesCS1A01G080000.1	Wheat	extracellular	72.73	75.0
TraesCS1D01G081700.1	Wheat	extracellular	72.29	74.55
TraesCS1B01G098000.1	Wheat	extracellular	71.86	73.45
GSMUA_Achr1P25160_001	Banana	extracellular	65.8	69.41
GSMUA_AchrUn_...	Banana	extracellular	65.37	69.27
GSMUA_Achr8P18750_001	Banana	extracellular, vacuole	64.5	68.98
GSMUA_Achr5P18440_001	Banana	extracellular	64.94	68.49
VIT_14s0060g00120.t01	Wine grape	extracellular	63.2	67.28
GSMUA_Achr8P29820_001	Banana	extracellular	65.8	66.09
VIT_07s0005g02380.t01	Wine grape	extracellular	61.47	65.44
Zm00001d008210_P002	Maize	extracellular	60.61	65.42
KRG96655	Soybean	extracellular, vacuole	61.04	64.38
KRH68383	Soybean	nucleus	60.61	64.22
PGSC0003DMT400047067	Potato	cytosol	58.01	63.51
PGSC0003DMT400047065	Potato	cytosol, extracellular	57.58	63.33
Zm00001d040519_P001	Maize	extracellular	58.87	62.39
Solyc01g102390.2.1	Tomato	extracellular	58.87	61.82
KRG90420	Soybean	extracellular, nucleus	59.74	61.61
KRH33715	Soybean	nucleus	59.31	61.44
Solyc01g102400.2.1	Tomato	extracellular	58.44	61.36
CDY11392	Canola	extracellular	58.44	61.36
Bra007652.1-P	Field mustard	extracellular	58.44	61.36
CDY06361	Canola	extracellular	56.71	60.65
Bra031671.1-P	Field mustard	extracellular	56.71	60.65
CDX89983	Canola	extracellular, vacuole	57.14	60.55
Bra033314.1-P	Field mustard	extracellular, vacuole	57.14	60.55
CDX76609	Canola	extracellular	57.58	60.45
AT1G02335.1	Thale cress	extracellular, vacuole	57.14	60.27
CDY22633	Canola	extracellular	56.28	60.19
KRH33687	Soybean	extracellular	57.58	60.18
AT1G09560.1	Thale cress	extracellular	56.71	59.82
CDY15231	Canola	extracellular, vacuole	56.28	59.63
AT3G62020.1	Thale cress	extracellular, vacuole	56.71	59.55
CDY31080	Canola	extracellular	55.84	58.9
Zm00001d011853_P001	Maize	extracellular	57.58	58.85
KRH33688	Soybean	extracellular	55.84	58.64
CDY20692	Canola	extracellular	55.84	58.64
Bra030785.1-P	Field mustard	extracellular	55.84	58.64
CDX93502	Canola	extracellular	55.84	57.85
Zm00001d042082_P001	Maize	extracellular	51.95	57.69
KRG96631	Soybean	extracellular, vacuole	45.89	57.61
KRH69151	Soybean	cytosol	38.1	57.52
CDY50897	Canola	extracellular	54.98	57.47
Bra020014.1-P	Field mustard	extracellular	55.41	57.4
Solyc01g102380.2.1	Tomato	extracellular	54.98	56.7
VIT_07s0005g02370.t01	Wine grape	extracellular	53.25	56.68
Zm00001d038137_P001	Maize	extracellular	53.68	54.63
HORVU1Hr1G017170.1	Barley	extracellular, plastid, vacuole	73.59	50.75
Zm00001d037513_P001	Maize	plastid	41.99	45.75
Zm00001d033583_P001	Maize	extracellular	42.86	44.0
Zm00001d043710_P001	Maize	extracellular, vacuole	41.13	43.18
Zm00001d034514_P001	Maize	extracellular	41.56	42.11
Zm00001d027890_P001	Maize	extracellular, vacuole	38.53	38.7
Zm00001d016697_P001	Maize	extracellular	38.96	38.46
Zm00001d032047_P001	Maize	cytosol	32.03	38.34
Zm00001d032048_P001	Maize	cytosol	18.61	33.33

Protein Annotations

Gene3D:2.60.120.10	MapMan:35.1	UniProt:A0A1D6HTL7	InterPro:Cupin_1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005576	GO:GO:0030145	GO:GO:0045735	GO:GO:0046872	InterPro:Germin
InterPro:Germin_Mn-BS	InterPro:IPR014710	ProteinID:ONM51722.1	PFAM:PF00190	PRINTS:PR00325	ScanProsite:PS00725
PANTHER:PTHR31238	PANTHER:PTHR31238:SF18	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	SMART:SM00835	SUPFAM:SSF51182
SignalP:SignalP-noTM	UniParc:UPI00022136F1	EnsemblPlantsGene:Zm00001d018954	EnsemblPlants:Zm00001d018954_P002	EnsemblPlants:Zm00001d018954_T002	SEG:seg

Description

Rhicadhesin receptor

Coordinates

chr7:+:10457757..10458921

Molecular Weight (calculated)

23572.4 Da

IEP (calculated)

8.705

GRAVY (calculated)

0.326

Length

231 amino acids

Sequence
(BLAST)

001: MAAIPSLLRR LAIVVATTAM VILLPSPSVA GDPDLLQDIC VADLTSTVKV NGYACKAAAA VTADDFYFSG LGGAGNTSAS AYGSAVTGAN VEKVPGLNTL
101: GVSMSRIDYA PGGGLNPPHT HPRATEMVFV LQGTLDVGFV TAANNRLVAR TLAPGDVFVF PRGLVHFQRN AGDGPAAVLS AFNSQLPGTQ SLAAALFAAS
201: PELPDAVLAK AFQVGTKEVD KIKARLAPKK A

Best Arabidopsis Sequence Match ( AT1G02335.1 )
(BLAST)

001: MMNSRISIII ALSCIMITSI RAYDPDALQD LCVADKSHGT KLNGFPCKET LNITESDFFF AGISKPAVIN STMGSAVTGA NVEKIPGLNT LSVSLARIDY
101: APGGLNPPHT HPRATEVVYV LEGELEVGFI TTANKLFTKT IKIGEVFVFP RGLVHFQKNN GKSPASVLSA FNSQLPGTAS VAATLFAAEP ALPEDVLTKT
201: FQVGSKMVDK IKERLATKK

Arabidopsis Description

GL22Germin-like protein subfamily 2 member 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ27]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.