Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- vacuole 2
- extracellular 3
- endoplasmic reticulum 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400047065 | Potato | cytosol, extracellular | 97.16 | 97.62 |
| Solyc01g102390.2.1 | Tomato | extracellular | 98.58 | 94.55 |
| VIT_14s0060g00120.t01 | Wine grape | extracellular | 71.09 | 69.12 |
| KRH68383 | Soybean | nucleus | 70.14 | 67.89 |
| KRH33715 | Soybean | nucleus | 71.56 | 67.71 |
| KRG96655 | Soybean | extracellular, vacuole | 70.14 | 67.58 |
| KRG90420 | Soybean | extracellular, nucleus | 71.56 | 67.41 |
| GSMUA_Achr1P25160_001 | Banana | extracellular | 68.72 | 66.21 |
| GSMUA_Achr5P18440_001 | Banana | extracellular | 68.72 | 66.21 |
| Os05t0277500-01 | Rice | extracellular | 69.19 | 66.06 |
| GSMUA_Achr8P18750_001 | Banana | extracellular, vacuole | 66.35 | 64.81 |
| TraesCS1D01G081700.1 | Wheat | extracellular | 68.25 | 64.29 |
| TraesCS3B01G200200.1 | Wheat | extracellular | 66.35 | 63.64 |
| TraesCS3D01G176100.1 | Wheat | extracellular | 66.35 | 63.64 |
| TraesCS1B01G098000.1 | Wheat | extracellular | 67.77 | 63.27 |
| GSMUA_AchrUn_... | Banana | extracellular | 64.93 | 62.84 |
| TraesCS3A01G165500.1 | Wheat | extracellular | 65.4 | 62.73 |
| VIT_07s0005g02380.t01 | Wine grape | extracellular | 63.98 | 62.21 |
| TraesCS1A01G080000.1 | Wheat | extracellular | 65.88 | 62.05 |
| CDY31080 | Canola | extracellular | 63.51 | 61.19 |
| CDY20692 | Canola | extracellular | 63.51 | 60.91 |
| Bra030785.1-P | Field mustard | extracellular | 63.51 | 60.91 |
| CDY06361 | Canola | extracellular | 61.14 | 59.72 |
| Bra031671.1-P | Field mustard | extracellular | 61.14 | 59.72 |
| Os01t0249200-01 | Rice | extracellular | 63.98 | 59.47 |
| CDY50897 | Canola | extracellular | 62.09 | 59.28 |
| CDY22633 | Canola | extracellular | 60.66 | 59.26 |
| CDX93502 | Canola | extracellular | 62.56 | 59.19 |
| KRH33688 | Soybean | extracellular | 61.61 | 59.09 |
| AT1G09560.1 | Thale cress | extracellular | 61.14 | 58.9 |
| KRH33687 | Soybean | extracellular | 61.61 | 58.82 |
| Bra020014.1-P | Field mustard | extracellular | 62.09 | 58.74 |
| VIT_07s0005g02370.t01 | Wine grape | extracellular | 60.19 | 58.53 |
| Zm00001d018954_P002 | Maize | extracellular | 63.51 | 58.01 |
| EES02420 | Sorghum | extracellular | 62.09 | 57.96 |
| GSMUA_Achr8P29820_001 | Banana | extracellular | 63.03 | 57.83 |
| KRG96631 | Soybean | extracellular, vacuole | 50.24 | 57.61 |
| EER95948 | Sorghum | extracellular | 63.03 | 57.58 |
| KRH69151 | Soybean | cytosol | 40.28 | 55.56 |
| HORVU3Hr1G034100.2 | Barley | cytosol, plastid | 60.66 | 48.48 |
| PGSC0003DMT400063166 | Potato | vacuole | 47.87 | 46.54 |
| PGSC0003DMT400063164 | Potato | vacuole | 46.45 | 44.55 |
| HORVU1Hr1G017170.1 | Barley | extracellular, plastid, vacuole | 68.72 | 43.28 |
| KXG32174 | Sorghum | plastid | 62.09 | 41.46 |
| PGSC0003DMT400058298 | Potato | extracellular, vacuole | 37.91 | 37.91 |
| PGSC0003DMT400061586 | Potato | extracellular | 37.44 | 37.26 |
| PGSC0003DMT400030317 | Potato | extracellular | 34.6 | 35.1 |
| PGSC0003DMT400036428 | Potato | extracellular | 33.65 | 34.13 |
| PGSC0003DMT400033858 | Potato | extracellular | 33.65 | 33.65 |
Protein Annotations
| Gene3D:2.60.120.10 | MapMan:35.1 | InterPro:Cupin_1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005576 | GO:GO:0030145 | GO:GO:0045735 | GO:GO:0046872 | InterPro:Germin | InterPro:Germin_Mn-BS |
| InterPro:IPR014710 | UniProt:M1BK35 | PFAM:PF00190 | EnsemblPlantsGene:PGSC0003DMG400018276 | PGSC:PGSC0003DMG400018276 | EnsemblPlants:PGSC0003DMT400047067 |
| PRINTS:PR00325 | ScanProsite:PS00725 | PANTHER:PTHR31238 | PANTHER:PTHR31238:SF18 | InterPro:RmlC-like_jellyroll | InterPro:RmlC_Cupin_sf |
| SMART:SM00835 | SUPFAM:SSF51182 | SignalP:SignalP-noTM | UniParc:UPI0002956C57 | : | : |
Description
Germin [Source:PGSC_GENE;Acc:PGSC0003DMG400018276]
Coordinates
chr1:+:79135853..79137552
Molecular Weight (calculated)
22274.0 Da
IEP (calculated)
8.247
GRAVY (calculated)
0.161
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVVAMLAIS LDKASAGDPD MLQDVCVADL TNSLTVNGYL CKKNFSEIDF SSMAIAKAGA TNNTFGSLVT GANVMKVPGL NTLGVSMARI DYAPGGINPP
101: HTHPRATEMI FVLEGELDVG FITTSNVLIT KHIVKGEVFA FPRGLVHFQQ NNGDVPAAVV AGFNSQLPGT QSIATTLFAS SPSVPDHVLT KTFQVGTKEI
201: QKIKSRLAPK K
101: HTHPRATEMI FVLEGELDVG FITTSNVLIT KHIVKGEVFA FPRGLVHFQQ NNGDVPAAVV AGFNSQLPGT QSIATTLFAS SPSVPDHVLT KTFQVGTKEI
201: QKIKSRLAPK K
001: MASPTLTLLL LLTTVSFFIS SSADPDMLQD LCVADLPSGI KINGFPCKDA ATVTSADFFS QGLAKPGLTN NTFGALVTGA NVMTIPGLNT LGVSLSRIDY
101: APGGLNPPHT HPRATEVVFV LEGTLDVGFL TTANKLISQS LKKGDVFAFP KGLVHFQKNN GDVPASVIAA FNSQLPGTQS LGATLFGSTP PVPDNILAQA
201: FQTSPGTVKH IKSKFQPKK
101: APGGLNPPHT HPRATEVVFV LEGTLDVGFL TTANKLISQS LKKGDVFAFP KGLVHFQKNN GDVPASVIAA FNSQLPGTQS LGATLFGSTP PVPDNILAQA
201: FQTSPGTVKH IKSKFQPKK
Arabidopsis Description
GLP4Germin-like protein subfamily 2 member 1 [Source:UniProtKB/Swiss-Prot;Acc:P94014]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.