Factsheet for PGSC0003DMT400058298

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

nucleus 2
vacuole 3
extracellular 4
endoplasmic reticulum 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	nucleus, secretory
EpiLoc:	nucleus
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g006500.2.1	Tomato	extracellular	94.79	90.91
VIT_01s0026g00970.t01	Wine grape	extracellular	66.82	63.8
KRH69437	Soybean	extracellular	59.72	57.27
KRH74710	Soybean	extracellular	59.72	57.27
AT1G10460.1	Thale cress	extracellular, vacuole	53.55	52.07
TraesCS4A01G010200.1	Wheat	cytosol, extracellular	51.66	51.66
Os03t0179100-00	Rice	extracellular, vacuole	53.55	50.22
Bra031713.1-P	Field mustard	vacuole	44.08	48.95
CDY34891	Canola	vacuole	44.08	48.95
TraesCS4B01G294100.1	Wheat	extracellular	51.18	48.43
Zm00001d027890_P001	Maize	extracellular, vacuole	51.66	47.39
CDY07800	Canola	vacuole	42.65	47.12
TraesCS4D01G293000.1	Wheat	endoplasmic reticulum, extracellular, vacuole	51.18	46.96
EER95401	Sorghum	vacuole	52.61	46.06
GSMUA_Achr1P21920_001	Banana	endoplasmic reticulum, extracellular	51.66	45.8
HORVU4Hr1G076480.3	Barley	vacuole	47.87	42.98
PGSC0003DMT400047065	Potato	cytosol, extracellular	37.91	38.1
PGSC0003DMT400047067	Potato	cytosol	37.91	37.91
PGSC0003DMT400063166	Potato	vacuole	36.02	35.02
PGSC0003DMT400063164	Potato	vacuole	36.02	34.55
PGSC0003DMT400061586	Potato	extracellular	31.75	31.6
PGSC0003DMT400030317	Potato	extracellular	30.33	30.77
PGSC0003DMT400033858	Potato	extracellular	30.33	30.33
PGSC0003DMT400036428	Potato	extracellular	29.86	30.29

Protein Annotations

Gene3D:2.60.120.10	MapMan:35.1	InterPro:Cupin_1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005576	GO:GO:0030145	GO:GO:0045735	GO:GO:0046872	InterPro:Germin	InterPro:IPR014710
UniProt:M1C2G1	PFAM:PF00190	EnsemblPlantsGene:PGSC0003DMG400022636	PGSC:PGSC0003DMG400022636	EnsemblPlants:PGSC0003DMT400058298	PRINTS:PR00325
PANTHER:PTHR31238	PANTHER:PTHR31238:SF5	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	SMART:SM00835	SUPFAM:SSF51182
SignalP:SignalP-noTM	UniParc:UPI000295A87E	SEG:seg	:	:	:

Description

Germin 5 [Source:PGSC_GENE;Acc:PGSC0003DMG400022636]

Coordinates

chr5:-:6670576..6672136

Molecular Weight (calculated)

22546.2 Da

IEP (calculated)

8.725

GRAVY (calculated)

0.068

Length

211 amino acids

Sequence
(BLAST)

001: MSVLVVLLGL VGSDPDPLQD YCVADTKKGT RENFYNGVPC INPQNVDISH FATSTLSKAG KIGIVFGFNV TLTSIFNLPG MNTQGLTMAR IDIGPNSLVS
101: PHSHPRASEV AILLKGSLLV GFINTSNHLF TQKLRPGDSF VFPKGMIHFL YNTDSKVQAL ALSGLSSQNP GVQMASPAAF ATGPTLPDEI SKKLFQINDQ
201: DVTRIRTSLG G

Best Arabidopsis Sequence Match ( AT1G10460.1 )
(BLAST)

001: MILNILLTLT LLMGRVKSDP DPLQDYCVSP PPSSHQQIFL NGKLCKDPTQ ASVSDFSTSA LSRPGNTKTK PFMINVTVTT TANLPGLNTV GLTMARLDFG
101: GSGVVPPHVH PRASEVTVCL DGVLLVGFVD TSGRVFTQEL HPGETFVFPK GLIHFLYNID TVSSALAVSG LSSQNPGTQI VSLSSFISKP PFLVEVLKSA
201: YDINGQDVAR IRKSLEG

Arabidopsis Description

GLP7Germin-like protein subfamily 1 member 1 [Source:UniProtKB/Swiss-Prot;Acc:P92998]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.