Factsheet for GSMUA_Achr1P21920_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

plastid 3
vacuole 3
endoplasmic reticulum 3
extracellular 4
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	plastid, secretory
BaCelLo:	plastid
EpiLoc:	vacuole
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0179100-00	Rice	extracellular, vacuole	58.82	62.22
TraesCS4A01G010200.1	Wheat	cytosol, extracellular	53.78	60.66
EER95401	Sorghum	vacuole	60.5	59.75
Zm00001d027890_P001	Maize	extracellular, vacuole	57.56	59.57
VIT_01s0026g00970.t01	Wine grape	extracellular	55.04	59.28
TraesCS4B01G294100.1	Wheat	extracellular	54.62	58.3
TraesCS4D01G293000.1	Wheat	endoplasmic reticulum, extracellular, vacuole	55.46	57.39
KRH74710	Soybean	extracellular	50.84	55.0
KRH69437	Soybean	extracellular	50.0	54.09
HORVU4Hr1G076480.3	Barley	vacuole	53.36	54.04
PGSC0003DMT400058298	Potato	extracellular, vacuole	45.8	51.66
AT1G10460.1	Thale cress	extracellular, vacuole	46.22	50.69
Solyc05g006500.2.1	Tomato	extracellular	45.38	49.09
Bra031713.1-P	Field mustard	vacuole	34.87	43.68
CDY34891	Canola	vacuole	34.87	43.68
CDY07800	Canola	vacuole	34.45	42.93
GSMUA_Achr4P17250_001	Banana	extracellular	30.67	40.33
GSMUA_AchrUn_...	Banana	extracellular	26.89	40.0
GSMUA_Achr5P18440_001	Banana	extracellular	36.55	39.73
GSMUA_Achr1P25160_001	Banana	extracellular	36.13	39.27
GSMUA_Achr8P18750_001	Banana	extracellular, vacuole	35.29	38.89
GSMUA_AchrUn_...	Banana	extracellular	34.45	37.61
GSMUA_Achr8P29820_001	Banana	extracellular	36.13	37.39
GSMUA_Achr9P16110_001	Banana	plasma membrane, plastid, vacuole	27.31	25.39
GSMUA_Achr2P18710_001	Banana	extracellular	25.21	24.0

Protein Annotations

Gene3D:2.60.120.10	MapMan:35.1	InterPro:Cupin_1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005576	GO:GO:0030145	GO:GO:0045735	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr1G21920_001	EnsemblPlants:GSMUA_Achr1P21920_001
EnsemblPlants:GSMUA_Achr1T21920_001	InterPro:Germin	InterPro:IPR014710	UniProt:M0S200	PFAM:PF00190	PRINTS:PR00325
PANTHER:PTHR31238	PANTHER:PTHR31238:SF5	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	SMART:SM00835	SUPFAM:SSF51182
SignalP:SignalP-TM	UniParc:UPI000295F3DC	SEG:seg	:	:	:

Description

Germin-like protein 3-1 [Source:GMGC_GENE;Acc:GSMUA_Achr1G21920_001]

Coordinates

chr1:+:16440436..16441152

Molecular Weight (calculated)

25249.4 Da

IEP (calculated)

8.758

GRAVY (calculated)

0.150

Length

238 amino acids

Sequence
(BLAST)

001: MSLHPSSQTS ASMERVVAPS QAILIVVLLL LLLSLSPSRP DPDLLLDYCV ADVAAQTFHL NGRPCIDPTL ARSAHFATSA LSQPNGAAAT ALFGFSVTTT
101: NATTLPGANA QGLAMARVDI VGGGLVPPHA HPRASEAALL LRGTLLVGFV DTSHRLYTQQ LRPGDTFLFS RGLVHFLYNL DPTTPAVVLS GFNSQNPGAQ
201: LASTTLFRSD PRFPEEVLKK AFKISGQDVQ RIQRNLGG

Best Arabidopsis Sequence Match ( AT1G10460.1 )
(BLAST)

001: MILNILLTLT LLMGRVKSDP DPLQDYCVSP PPSSHQQIFL NGKLCKDPTQ ASVSDFSTSA LSRPGNTKTK PFMINVTVTT TANLPGLNTV GLTMARLDFG
101: GSGVVPPHVH PRASEVTVCL DGVLLVGFVD TSGRVFTQEL HPGETFVFPK GLIHFLYNID TVSSALAVSG LSSQNPGTQI VSLSSFISKP PFLVEVLKSA
201: YDINGQDVAR IRKSLEG

Arabidopsis Description

GLP7Germin-like protein subfamily 1 member 1 [Source:UniProtKB/Swiss-Prot;Acc:P92998]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.