Factsheet for Solyc05g006500.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058298	Potato	extracellular, vacuole	90.91	94.79
VIT_01s0026g00970.t01	Wine grape	extracellular	64.55	64.25
KRH69437	Soybean	extracellular	58.18	58.18
KRH74710	Soybean	extracellular	58.18	58.18
AT1G10460.1	Thale cress	extracellular, vacuole	52.27	53.0
TraesCS4A01G010200.1	Wheat	cytosol, extracellular	49.55	51.66
Os03t0179100-00	Rice	extracellular, vacuole	51.82	50.67
Bra031713.1-P	Field mustard	vacuole	43.64	50.53
CDY34891	Canola	vacuole	43.64	50.53
TraesCS4B01G294100.1	Wheat	extracellular	50.45	49.78
TraesCS4D01G293000.1	Wheat	endoplasmic reticulum, extracellular, vacuole	50.45	48.26
CDY07800	Canola	vacuole	41.82	48.17
Zm00001d027890_P001	Maize	extracellular, vacuole	49.55	47.39
EER95401	Sorghum	vacuole	50.45	46.06
GSMUA_Achr1P21920_001	Banana	endoplasmic reticulum, extracellular	49.09	45.38
HORVU4Hr1G076480.3	Barley	vacuole	46.82	43.83
Solyc01g102400.2.1	Tomato	extracellular	38.64	38.64
Solyc01g102390.2.1	Tomato	extracellular	38.64	38.64
Solyc03g113580.1.1	Tomato	vacuole	35.45	35.94
Solyc03g113570.1.1	Tomato	vacuole	35.91	35.91
Solyc01g102380.2.1	Tomato	extracellular	34.55	33.93
Solyc07g041720.1.1	Tomato	nucleus, plastid	31.36	32.7
Solyc03g123410.1.1	Tomato	nucleus	30.91	32.69
Solyc11g006980.1.1	Tomato	extracellular	29.55	30.66

Protein Annotations

Gene3D:2.60.120.10	MapMan:35.1	InterPro:Cupin_1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0030145	GO:GO:0030312	GO:GO:0045735
GO:GO:0046872	InterPro:Germin	InterPro:IPR014710	UniProt:K4BWH6	PFAM:PF00190	PRINTS:PR00325
PANTHER:PTHR31238	PANTHER:PTHR31238:SF5	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	SMART:SM00835	SUPFAM:SSF51182
SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc05g006500.2	EnsemblPlants:Solyc05g006500.2.1	UniParc:UPI00027673D5	SEG:seg	:

Description

Germin-like protein subfamily 1 member 1 [Source:Projected from Arabidopsis thaliana (AT1G10460) UniProtKB/Swiss-Prot;Acc:P92998]

Coordinates

chr5:+:1121409..1122870

Molecular Weight (calculated)

23536.4 Da

IEP (calculated)

6.672

GRAVY (calculated)

0.109

Length

220 amino acids

Sequence
(BLAST)

001: METRTIVLSM SVLVVLLGLV GSDPDPLQDY CVADTKKATR ENFYNGVPCI NPQNVDISHF ATSALSKAGK IGLVFGFNVT LTTIFNLPGM NTQGLTMARI
101: DIGPNSLVSP HSHPRASEVA ILLKGSLLVG FINTSNHLFT QNLSPGDSFV FPKGMIHFLY NTDSKVQALA LSGLSSQNPG LQMASPAAFA TEPTLPDEVS
201: QKLFQINDQD VTKIRTSLGG

Best Arabidopsis Sequence Match ( AT1G10460.1 )
(BLAST)

001: MILNILLTLT LLMGRVKSDP DPLQDYCVSP PPSSHQQIFL NGKLCKDPTQ ASVSDFSTSA LSRPGNTKTK PFMINVTVTT TANLPGLNTV GLTMARLDFG
101: GSGVVPPHVH PRASEVTVCL DGVLLVGFVD TSGRVFTQEL HPGETFVFPK GLIHFLYNID TVSSALAVSG LSSQNPGTQI VSLSSFISKP PFLVEVLKSA
201: YDINGQDVAR IRKSLEG

Arabidopsis Description

GLP7Germin-like protein subfamily 1 member 1 [Source:UniProtKB/Swiss-Prot;Acc:P92998]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.