Subcellular Localization
min:
: max
Winner_takes_all: extracellular, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 3
- golgi 2
- plasma membrane 2
- endoplasmic reticulum 2
- vacuole 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G294100.1 | Wheat | extracellular | 92.89 | 87.89 |
| TraesCS4D01G293000.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 92.42 | 84.78 |
| HORVU4Hr1G076480.3 | Barley | vacuole | 86.73 | 77.87 |
| Os03t0179100-00 | Rice | extracellular, vacuole | 82.46 | 77.33 |
| Zm00001d027890_P001 | Maize | extracellular, vacuole | 76.3 | 70.0 |
| EER95401 | Sorghum | vacuole | 78.67 | 68.88 |
| VIT_01s0026g00970.t01 | Wine grape | extracellular | 58.77 | 56.11 |
| GSMUA_Achr1P21920_001 | Banana | endoplasmic reticulum, extracellular | 60.66 | 53.78 |
| PGSC0003DMT400058298 | Potato | extracellular, vacuole | 51.66 | 51.66 |
| Solyc05g006500.2.1 | Tomato | extracellular | 51.66 | 49.55 |
| KRH74710 | Soybean | extracellular | 48.82 | 46.82 |
| KRH69437 | Soybean | extracellular | 48.34 | 46.36 |
| AT1G10460.1 | Thale cress | extracellular, vacuole | 46.45 | 45.16 |
| TraesCS6A01G382000.1 | Wheat | cytosol | 25.59 | 44.26 |
| Bra031713.1-P | Field mustard | vacuole | 36.02 | 40.0 |
| CDY34891 | Canola | vacuole | 36.02 | 40.0 |
| CDY07800 | Canola | vacuole | 34.12 | 37.7 |
| TraesCS6A01G382200.1 | Wheat | extracellular | 38.39 | 37.5 |
| TraesCS6A01G382100.1 | Wheat | extracellular, plasma membrane, vacuole | 37.91 | 37.04 |
| TraesCS1A01G080000.1 | Wheat | extracellular | 38.86 | 36.61 |
| TraesCS6A01G383000.1 | Wheat | extracellular | 37.44 | 36.57 |
| TraesCS3A01G253300.1 | Wheat | extracellular | 38.39 | 36.49 |
| TraesCS3A01G165500.1 | Wheat | extracellular | 37.91 | 36.36 |
| TraesCS2A01G109200.1 | Wheat | extracellular | 37.91 | 36.2 |
| TraesCS6A01G382900.1 | Wheat | extracellular | 36.02 | 35.19 |
| TraesCS3A01G040900.1 | Wheat | extracellular | 36.49 | 34.22 |
| TraesCS4A01G181700.1 | Wheat | extracellular | 36.02 | 33.93 |
| TraesCS2A01G211800.1 | Wheat | extracellular | 36.49 | 33.92 |
| TraesCS4A01G278900.1 | Wheat | extracellular, unclear | 36.49 | 33.92 |
| TraesCS4A01G279300.1 | Wheat | extracellular | 35.55 | 33.63 |
| TraesCS4A01G181900.1 | Wheat | extracellular | 35.55 | 33.63 |
| TraesCS4A01G279200.1 | Wheat | extracellular | 35.55 | 33.48 |
| TraesCS4A01G279100.1 | Wheat | extracellular | 35.07 | 33.33 |
| TraesCS5A01G453200.1 | Wheat | extracellular | 36.02 | 33.04 |
| TraesCS6A01G028700.1 | Wheat | extracellular, unclear | 35.55 | 32.89 |
| TraesCS7A01G178300.1 | Wheat | extracellular | 32.23 | 32.08 |
| TraesCS2A01G075000.1 | Wheat | extracellular | 31.28 | 30.99 |
| TraesCS4A01G181600.1 | Wheat | mitochondrion | 25.12 | 30.11 |
| TraesCS4A01G181800.1 | Wheat | extracellular | 24.17 | 29.31 |
Protein Annotations
| Gene3D:2.60.120.10 | MapMan:35.1 | InterPro:Cupin_1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0030145 |
| GO:GO:0045735 | InterPro:Germin | InterPro:Germin_Mn-BS | InterPro:IPR014710 | PFAM:PF00190 | PRINTS:PR00325 |
| ScanProsite:PS00725 | PANTHER:PTHR31238 | PANTHER:PTHR31238:SF5 | InterPro:RmlC-like_jellyroll | InterPro:RmlC_Cupin_sf | SMART:SM00835 |
| SUPFAM:SSF51182 | EnsemblPlantsGene:TraesCS4A01G010200 | EnsemblPlants:TraesCS4A01G010200.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr4A:+:5982879..5983514
Molecular Weight (calculated)
22231.5 Da
IEP (calculated)
6.505
GRAVY (calculated)
0.138
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MIFFFSAVCN SDPDLLFDHC VADTAAAAAF HFNGLPCIDP ATARADHFAT SALSEPTDPS ATLFGFNATV TSPAASLPGA NAQGLAMARI DLAPGGMAPL
101: HSHPRASEVA LVLSGGVLVG FADTSYRLYT QRLRAGEAFV FPRGMVHFMR NEDVSAPAVV LSGLNSQSPG AQLVPLSAFR TEPRLPDEVV KKTFRITGQD
201: VQRIQRSLGG S
101: HSHPRASEVA LVLSGGVLVG FADTSYRLYT QRLRAGEAFV FPRGMVHFMR NEDVSAPAVV LSGLNSQSPG AQLVPLSAFR TEPRLPDEVV KKTFRITGQD
201: VQRIQRSLGG S
001: MILNILLTLT LLMGRVKSDP DPLQDYCVSP PPSSHQQIFL NGKLCKDPTQ ASVSDFSTSA LSRPGNTKTK PFMINVTVTT TANLPGLNTV GLTMARLDFG
101: GSGVVPPHVH PRASEVTVCL DGVLLVGFVD TSGRVFTQEL HPGETFVFPK GLIHFLYNID TVSSALAVSG LSSQNPGTQI VSLSSFISKP PFLVEVLKSA
201: YDINGQDVAR IRKSLEG
101: GSGVVPPHVH PRASEVTVCL DGVLLVGFVD TSGRVFTQEL HPGETFVFPK GLIHFLYNID TVSSALAVSG LSSQNPGTQI VSLSSFISKP PFLVEVLKSA
201: YDINGQDVAR IRKSLEG
Arabidopsis Description
GLP7Germin-like protein subfamily 1 member 1 [Source:UniProtKB/Swiss-Prot;Acc:P92998]
SUBAcon: [extracellular,vacuole]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.