Factsheet for TraesCS4A01G279300.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G031700.1	Wheat	extracellular	98.65	98.65
TraesCS4A01G181900.1	Wheat	extracellular	97.76	97.76
TraesCS3B01G282400.1	Wheat	extracellular, vacuole	95.52	95.09
TraesCS4A01G279200.1	Wheat	extracellular	94.62	94.2
HORVU4Hr1G005380.1	Barley	extracellular	94.17	93.75
TraesCS4A01G181700.1	Wheat	extracellular	94.17	93.75
TraesCS4A01G181800.1	Wheat	extracellular	72.65	93.1
TraesCS4A01G279100.1	Wheat	extracellular	91.93	92.34
TraesCS4A01G181600.1	Wheat	mitochondrion	65.02	82.39
TraesCS4A01G278900.1	Wheat	extracellular, unclear	81.61	80.18
TraesCS2A01G211800.1	Wheat	extracellular	80.72	79.3
Os03t0694000-01	Rice	extracellular	78.03	75.98
Os03t0693800-00	Rice	extracellular	77.58	75.55
EER91050	Sorghum	extracellular	75.78	75.11
Os03t0693700-01	Rice	extracellular, plasma membrane, vacuole	75.34	74.01
Zm00001d033583_P001	Maize	extracellular	73.54	72.89
Os03t0693900-00	Rice	extracellular	73.54	72.25
GSMUA_Achr4P17250_001	Banana	extracellular	44.39	54.7
GSMUA_AchrUn_...	Banana	extracellular	36.77	51.25
TraesCS6A01G383000.1	Wheat	extracellular	48.43	50.0
TraesCS6A01G382000.1	Wheat	cytosol	27.35	50.0
TraesCS6A01G382900.1	Wheat	extracellular	47.53	49.07
TraesCS6A01G382200.1	Wheat	extracellular	47.53	49.07
TraesCS3A01G040900.1	Wheat	extracellular	48.88	48.44
TraesCS6A01G382100.1	Wheat	extracellular, plasma membrane, vacuole	46.19	47.69
TraesCS1A01G080000.1	Wheat	extracellular	47.09	46.88
TraesCS5A01G453200.1	Wheat	extracellular	47.09	45.65
TraesCS3A01G165500.1	Wheat	extracellular	44.84	45.45
TraesCS2A01G109200.1	Wheat	extracellular	43.05	43.44
TraesCS3A01G253300.1	Wheat	extracellular	40.81	40.99
TraesCS7A01G178300.1	Wheat	extracellular	36.77	38.68
TraesCS2A01G075000.1	Wheat	extracellular	35.87	37.56
TraesCS4A01G010200.1	Wheat	cytosol, extracellular	33.63	35.55
TraesCS6A01G028700.1	Wheat	extracellular, unclear	35.87	35.09

Protein Annotations

EnsemblPlants:TraesCS4A01G279300.1	EnsemblPlantsGene:TraesCS4A01G279300	Gene3D:2.60.120.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0030145
GO:GO:0045735	InterPro:Cupin_1	InterPro:Germin	InterPro:Germin_Mn-BS	InterPro:IPR014710	InterPro:RmlC-like_jellyroll
InterPro:RmlC_Cupin_sf	PANTHER:PTHR31238	PANTHER:PTHR31238:SF26	PFAM:PF00190	PRINTS:PR00325	ScanProsite:PS00725
SignalP:SignalP-noTM	SMART:SM00835	SUPFAM:SSF51182	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr4A:+:586708732..586709403

Molecular Weight (calculated)

23429.5 Da

IEP (calculated)

6.509

GRAVY (calculated)

0.165

Length

223 amino acids

Sequence
(BLAST)

001: MGCSKLIAGM FTMLLLAPAV LATDPDPLQD FCMADLDGKT VSVNGHPCKP MSEAGDDFLF SSKLAKAGNT STPNGSAVTE LDVAEWPGTN TLGVSMNRVD
101: FAPGGTNPPH IHPRATEIGI VMKGELLVGI LGSLDSGNKL YSRVVRAGET FLIPRGLMHF QFNVGKTEAS MVVSFNSQNP GIVFVPLTLF GSNPPIPTPV
201: LTKALRVEAG VVELLKSKFA SGS

Best Arabidopsis Sequence Match ( AT1G18970.1 )
(BLAST)

001: MATLQIPSAL LRSFLLMFCL FVIPSLSSDS DPLQDFCVGD LKASASINGF PCKSAVSASD FFYSGLGGPL DTSNPNGVTV APANVLTFPG LNTLGISMNN
101: VELAPGGVNP PHLHPRATEV GTVIEGSVFV GFLSTNNTLF SKVLNAGEAF VIPRGLVHFQ WNVGQVKARM ITAFNSQLPG AVVLPSTLFG SKPEIPNAVL
201: TRAFRTDDTT VQNLKSKFAV

Arabidopsis Description

GLP1Germin-like protein subfamily T member 1 [Source:UniProtKB/Swiss-Prot;Acc:P92995]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.