Factsheet for TraesCS4A01G279200.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G033300.1	Wheat	extracellular	98.66	98.66
TraesCS4D01G032000.1	Wheat	extracellular	97.32	97.32
TraesCS4A01G181800.1	Wheat	extracellular	75.45	97.13
TraesCS4A01G181700.1	Wheat	extracellular	96.43	96.43
HORVU4Hr1G005380.1	Barley	extracellular	95.09	95.09
TraesCS4A01G279300.1	Wheat	extracellular	94.2	94.62
TraesCS4A01G181900.1	Wheat	extracellular	92.86	93.27
TraesCS4A01G279100.1	Wheat	extracellular	92.41	93.24
TraesCS4A01G181600.1	Wheat	mitochondrion	65.62	83.52
TraesCS4A01G278900.1	Wheat	extracellular, unclear	79.46	78.41
TraesCS2A01G211800.1	Wheat	extracellular	78.57	77.53
Os03t0694000-01	Rice	extracellular	77.68	75.98
Os03t0693800-00	Rice	extracellular	77.23	75.55
EER91050	Sorghum	extracellular	75.0	74.67
Os03t0693700-01	Rice	extracellular, plasma membrane, vacuole	74.55	73.57
Zm00001d033583_P001	Maize	extracellular	73.21	72.89
Os03t0693900-00	Rice	extracellular	73.21	72.25
GSMUA_Achr4P17250_001	Banana	extracellular	44.64	55.25
GSMUA_AchrUn_...	Banana	extracellular	37.5	52.5
TraesCS6A01G382000.1	Wheat	cytosol	27.23	50.0
TraesCS6A01G383000.1	Wheat	extracellular	47.32	49.07
TraesCS6A01G382200.1	Wheat	extracellular	46.88	48.61
TraesCS6A01G382900.1	Wheat	extracellular	46.43	48.15
TraesCS6A01G382100.1	Wheat	extracellular, plasma membrane, vacuole	45.98	47.69
TraesCS3A01G040900.1	Wheat	extracellular	47.77	47.56
TraesCS1A01G080000.1	Wheat	extracellular	46.43	46.43
TraesCS5A01G453200.1	Wheat	extracellular	47.32	46.09
TraesCS3A01G165500.1	Wheat	extracellular	44.64	45.45
TraesCS2A01G109200.1	Wheat	extracellular	43.75	44.34
TraesCS3A01G253300.1	Wheat	extracellular	41.07	41.44
TraesCS7A01G178300.1	Wheat	extracellular	35.27	37.26
TraesCS2A01G075000.1	Wheat	extracellular	34.82	36.62
TraesCS4A01G010200.1	Wheat	cytosol, extracellular	33.48	35.55
TraesCS6A01G028700.1	Wheat	extracellular, unclear	35.71	35.09

Protein Annotations

Gene3D:2.60.120.10	MapMan:35.1	InterPro:Cupin_1	GO:GO:0003674	GO:GO:0005488	GO:GO:0030145
GO:GO:0045735	InterPro:Germin	InterPro:Germin_Mn-BS	InterPro:IPR014710	PFAM:PF00190	PRINTS:PR00325
ScanProsite:PS00725	PANTHER:PTHR31238	PANTHER:PTHR31238:SF26	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	SMART:SM00835
SUPFAM:SSF51182	SignalP:SignalP-noTM	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS4A01G279200	EnsemblPlants:TraesCS4A01G279200.1	SEG:seg

Description

No Description!

Coordinates

chr4A:-:586699223..586699897

Molecular Weight (calculated)

23522.5 Da

IEP (calculated)

6.509

GRAVY (calculated)

0.230

Length

224 amino acids

Sequence
(BLAST)

001: MGCSKTLVAA LFAMLFLAST VLATDPDPLQ DFCVADLDGK AVSVNGHTCK PMSEAGDDFL FSSKLAKAGN TSTPNGSAVT ELDVAEWPGT NTLGVSMNRV
101: DFAPGGTNPP HIHPRATEIG IVMKGELLVG ILGSLDSGNK LYSRVVRAGE TFLIPRGLMH FQFNVGKTEA SMVVSFNSQN PGIVFVPLTL FGSNPPIPTP
201: VLTKALRVEA GVVELLKSKF AAGF

Best Arabidopsis Sequence Match ( AT1G18970.1 )
(BLAST)

001: MATLQIPSAL LRSFLLMFCL FVIPSLSSDS DPLQDFCVGD LKASASINGF PCKSAVSASD FFYSGLGGPL DTSNPNGVTV APANVLTFPG LNTLGISMNN
101: VELAPGGVNP PHLHPRATEV GTVIEGSVFV GFLSTNNTLF SKVLNAGEAF VIPRGLVHFQ WNVGQVKARM ITAFNSQLPG AVVLPSTLFG SKPEIPNAVL
201: TRAFRTDDTT VQNLKSKFAV

Arabidopsis Description

GLP1Germin-like protein subfamily T member 1 [Source:UniProtKB/Swiss-Prot;Acc:P92995]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.