Factsheet for TraesCS4D01G032000.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

extracellular: 19786127

msms PMID: 19786127 doi

FJ Kong, A Oyanagi, S Komatsu

National Institute of Crop Science, Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G032200.1	Wheat	extracellular	97.77	97.77
TraesCS4A01G279200.1	Wheat	extracellular	97.32	97.32
TraesCS4B01G033300.1	Wheat	extracellular	97.32	97.32
TraesCS4D01G031800.1	Wheat	extracellular	96.88	96.88
HORVU4Hr1G005380.1	Barley	extracellular	96.43	96.43
TraesCS4D01G031600.1	Wheat	extracellular, vacuole	96.43	96.43
TraesCS4D01G031900.1	Wheat	extracellular	95.98	95.98
TraesCS4D01G030700.1	Wheat	extracellular	95.98	95.98
TraesCS4D01G030600.1	Wheat	extracellular	95.54	95.54
TraesCS4D01G031700.1	Wheat	extracellular	95.09	95.52
TraesCS4D01G032100.1	Wheat	extracellular, vacuole	77.23	94.54
TraesCS4D01G030800.1	Wheat	extracellular	92.86	92.86
TraesCS4D01G032500.1	Wheat	extracellular, unclear	81.7	80.62
Os03t0694000-01	Rice	extracellular	78.12	76.42
Os03t0693800-00	Rice	extracellular	77.68	75.98
EER91050	Sorghum	extracellular	75.89	75.56
Os03t0693700-01	Rice	extracellular, plasma membrane, vacuole	75.0	74.01
Zm00001d033583_P001	Maize	extracellular	74.11	73.78
Os03t0693900-00	Rice	extracellular	74.11	73.13
GSMUA_Achr4P17250_001	Banana	extracellular	44.64	55.25
GSMUA_AchrUn_...	Banana	extracellular	37.5	52.5
TraesCS6D01G367000.1	Wheat	extracellular, plasma membrane, vacuole	47.32	49.07
TraesCS3D01G489700.1	Wheat	extracellular	48.66	48.44
TraesCS3D01G489800.1	Wheat	extracellular	48.66	48.44
TraesCS1D01G081700.1	Wheat	extracellular	48.21	48.21
TraesCS6D01G367800.1	Wheat	extracellular	46.43	48.15
TraesCS6D01G367700.1	Wheat	extracellular	46.43	48.15
TraesCS6D01G366700.1	Wheat	extracellular, plasma membrane, vacuole	45.54	48.11
TraesCS6D01G366900.1	Wheat	vacuole	45.54	48.11
TraesCS7D01G477200.1	Wheat	extracellular	47.77	47.56
TraesCS3D01G490500.1	Wheat	extracellular	47.77	47.56
TraesCS3D01G176100.1	Wheat	extracellular	45.09	45.91
TraesCS5D01G464000.1	Wheat	extracellular	46.88	45.65
TraesCS3D01G490200.1	Wheat	extracellular	45.54	44.74
TraesCS3D01G490600.1	Wheat	extracellular	45.54	44.74
TraesCS3D01G490100.1	Wheat	extracellular	45.54	44.54
TraesCS3D01G490300.1	Wheat	extracellular	35.71	44.2
TraesCS2D01G109300.1	Wheat	vacuole	42.86	43.05
TraesCS3D01G490400.1	Wheat	extracellular	40.18	41.67
TraesCS3D01G254200.1	Wheat	extracellular	41.07	41.44
TraesCS7D01G180200.1	Wheat	extracellular, vacuole	35.71	37.74
TraesCS2D01G073700.1	Wheat	extracellular	35.27	37.26
TraesCS2D01G073600.1	Wheat	extracellular	33.48	36.06
TraesCS6D01G033100.1	Wheat	golgi	35.71	35.09
TraesCS2D01G566700.1	Wheat	extracellular	31.25	32.86
TraesCS4D01G293000.1	Wheat	endoplasmic reticulum, extracellular, vacuole	33.48	32.61

Protein Annotations

EnsemblPlants:TraesCS4D01G032000.1	EnsemblPlantsGene:TraesCS4D01G032000	Gene3D:2.60.120.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0030145
GO:GO:0045735	InterPro:Cupin_1	InterPro:Germin	InterPro:Germin_Mn-BS	InterPro:IPR014710	InterPro:RmlC-like_jellyroll
InterPro:RmlC_Cupin_sf	PANTHER:PTHR31238	PANTHER:PTHR31238:SF26	PFAM:PF00190	PRINTS:PR00325	ScanProsite:PS00725
SignalP:SignalP-noTM	SMART:SM00835	SUPFAM:SSF51182	TMHMM:TMhelix	MapMan:35.1	:

Description

No Description!

Coordinates

chr4D:+:14862810..14863484

Molecular Weight (calculated)

23613.7 Da

IEP (calculated)

6.945

GRAVY (calculated)

0.197

Length

224 amino acids

Sequence
(BLAST)

001: MGYSKTLVAG LFAMLLLAPA VLATDPDPLQ DFCVADLDGK AVSVNGHTCK PMSEAGDDFL FSSKLAKAGN TSTPNGSAVT ELDVAEWPGT NTLGVSMNRV
101: DFAPGGTNPP HIHPRATEIG IVMKGELLVG ILGSLDSGNK LYSRVVRAGE TFLIPRGLMH FQFNVGKTEA SMVVSFNSQN PGIVFVPLTL FGSNPPIPTP
201: VLTKALRVEA RVVELLKSKF AAGF

Best Arabidopsis Sequence Match ( AT1G18970.1 )
(BLAST)

001: MATLQIPSAL LRSFLLMFCL FVIPSLSSDS DPLQDFCVGD LKASASINGF PCKSAVSASD FFYSGLGGPL DTSNPNGVTV APANVLTFPG LNTLGISMNN
101: VELAPGGVNP PHLHPRATEV GTVIEGSVFV GFLSTNNTLF SKVLNAGEAF VIPRGLVHFQ WNVGQVKARM ITAFNSQLPG AVVLPSTLFG SKPEIPNAVL
201: TRAFRTDDTT VQNLKSKFAV

Arabidopsis Description

GLP1Germin-like protein subfamily T member 1 [Source:UniProtKB/Swiss-Prot;Acc:P92995]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.