Factsheet for Zm00001d033583_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91050	Sorghum	extracellular	92.89	92.89
Os03t0694000-01	Rice	extracellular	80.0	78.6
TraesCS4B01G033500.1	Wheat	cytosol	44.44	78.12
Os03t0693800-00	Rice	extracellular	79.11	77.73
Os03t0693900-00	Rice	extracellular	76.44	75.77
Os03t0693700-01	Rice	extracellular, plasma membrane, vacuole	76.44	75.77
TraesCS4D01G032200.1	Wheat	extracellular	74.22	74.55
TraesCS3B01G282500.1	Wheat	extracellular	74.22	74.55
HORVU4Hr1G005380.1	Barley	extracellular	74.22	74.55
TraesCS4A01G279100.1	Wheat	extracellular	73.33	74.32
TraesCS4D01G032000.1	Wheat	extracellular	73.78	74.11
TraesCS3B01G282400.1	Wheat	extracellular, vacuole	73.78	74.11
TraesCS4D01G031800.1	Wheat	extracellular	73.78	74.11
TraesCS4B01G033100.1	Wheat	extracellular, vacuole	73.78	74.11
TraesCS4D01G031700.1	Wheat	extracellular	73.33	73.99
TraesCS4D01G031600.1	Wheat	extracellular, vacuole	73.33	73.66
TraesCS4D01G030800.1	Wheat	extracellular	73.33	73.66
TraesCS4D01G030700.1	Wheat	extracellular	73.33	73.66
TraesCS4B01G033600.1	Wheat	extracellular, unclear	73.33	73.66
TraesCS4A01G181900.1	Wheat	extracellular	72.89	73.54
TraesCS4A01G279300.1	Wheat	extracellular	72.89	73.54
TraesCS4A01G279200.1	Wheat	extracellular	72.89	73.21
TraesCS4A01G181700.1	Wheat	extracellular	72.89	73.21
TraesCS4B01G033300.1	Wheat	extracellular	72.44	72.77
TraesCS4D01G031900.1	Wheat	extracellular	72.44	72.77
TraesCS4D01G030600.1	Wheat	extracellular	72.0	72.32
TraesCS4D01G032100.1	Wheat	extracellular, vacuole	58.67	72.13
TraesCS4B01G033400.1	Wheat	extracellular	73.78	71.55
TraesCS4A01G181800.1	Wheat	extracellular	54.22	70.11
TraesCS4A01G278900.1	Wheat	extracellular, unclear	70.67	70.04
HORVU4Hr1G005440.3	Barley	extracellular	72.89	69.79
TraesCS4B01G033200.1	Wheat	extracellular, vacuole	69.33	69.64
HORVU4Hr1G005540.1	Barley	extracellular	71.11	69.57
TraesCS4D01G032500.1	Wheat	extracellular, unclear	69.78	69.16
TraesCS2A01G211800.1	Wheat	extracellular	69.78	69.16
TraesCS4A01G181600.1	Wheat	mitochondrion	53.78	68.75
TraesCS3B01G282300.1	Wheat	extracellular	61.78	67.8
GSMUA_Achr4P17250_001	Banana	extracellular	42.67	53.04
GSMUA_AchrUn_...	Banana	extracellular	36.0	50.62
Zm00001d008210_P002	Maize	extracellular	45.78	48.13
Zm00001d038137_P001	Maize	extracellular	48.0	47.58
Zm00001d034514_P001	Maize	extracellular	47.56	46.93
Zm00001d011853_P001	Maize	extracellular	46.67	46.46
Zm00001d040519_P001	Maize	extracellular	44.0	45.41
Zm00001d042082_P001	Maize	extracellular	40.89	44.23
Zm00001d043710_P001	Maize	extracellular, vacuole	42.67	43.64
Zm00001d018954_P002	Maize	extracellular	44.0	42.86
Zm00001d016697_P001	Maize	extracellular	37.33	35.9
Zm00001d037513_P001	Maize	plastid	32.89	34.91
Zm00001d027890_P001	Maize	extracellular, vacuole	35.56	34.78
Zm00001d032047_P001	Maize	cytosol	27.56	32.12
Zm00001d032048_P001	Maize	cytosol	15.56	27.13

Protein Annotations

EntrezGene:100272932	Gene3D:2.60.120.10	MapMan:35.1	UniProt:B4FRS8	EMBL:BT039816	InterPro:Cupin_1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005576	GO:GO:0030145	GO:GO:0045735
GO:GO:0046872	InterPro:Germin	InterPro:Germin_Mn-BS	InterPro:IPR014710	ProteinID:ONM07971.1	PFAM:PF00190
PRINTS:PR00325	ScanProsite:PS00725	PANTHER:PTHR31238	PANTHER:PTHR31238:SF26	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf
SMART:SM00835	SUPFAM:SSF51182	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI00017B78C1	EnsemblPlantsGene:Zm00001d033583
EnsemblPlants:Zm00001d033583_P001	EnsemblPlants:Zm00001d033583_T001	SEG:seg	:	:	:

Description

Germin-like protein subfamily T member 1

Coordinates

chr1:-:267810245..267810922

Molecular Weight (calculated)

23787.6 Da

IEP (calculated)

6.254

GRAVY (calculated)

0.084

Length

225 amino acids

Sequence
(BLAST)

001: MEKYTKALAS LLTMLVLAPL LAMATDPDPL QDFCVADLNG KPSVNGYPCQ PPSSAGDQFL FSTKIATGGD PLANPNGSNV TELDVSEWPG VNTLGVSMNR
101: VDFAPGGTNP PHVHPRATEV GLVTRGELLV GIVGSLDSGN RYYSKVVRAG ETFVIPRGLV HFQFNVGKED ATMVVSFNSQ KPGIIFVPLT LFGSSPPIPT
201: PVLSKALRVD ASVVDLIKSK FTGGY

Best Arabidopsis Sequence Match ( AT1G18970.1 )
(BLAST)

001: MATLQIPSAL LRSFLLMFCL FVIPSLSSDS DPLQDFCVGD LKASASINGF PCKSAVSASD FFYSGLGGPL DTSNPNGVTV APANVLTFPG LNTLGISMNN
101: VELAPGGVNP PHLHPRATEV GTVIEGSVFV GFLSTNNTLF SKVLNAGEAF VIPRGLVHFQ WNVGQVKARM ITAFNSQLPG AVVLPSTLFG SKPEIPNAVL
201: TRAFRTDDTT VQNLKSKFAV

Arabidopsis Description

GLP1Germin-like protein subfamily T member 1 [Source:UniProtKB/Swiss-Prot;Acc:P92995]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.