Factsheet for TraesCS4A01G278900.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, unclear
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G211800.1	Wheat	extracellular	98.24	98.24
TraesCS4D01G032500.1	Wheat	extracellular, unclear	95.15	95.15
HORVU4Hr1G005540.1	Barley	extracellular	90.31	89.13
TraesCS4A01G279300.1	Wheat	extracellular	80.18	81.61
TraesCS4A01G181900.1	Wheat	extracellular	79.3	80.72
TraesCS4A01G279100.1	Wheat	extracellular	78.41	80.18
TraesCS4A01G279200.1	Wheat	extracellular	78.41	79.46
TraesCS4A01G181700.1	Wheat	extracellular	78.41	79.46
TraesCS4A01G181800.1	Wheat	extracellular	59.91	78.16
EER91050	Sorghum	extracellular	71.81	72.44
TraesCS4A01G181600.1	Wheat	mitochondrion	55.51	71.59
Os03t0694000-01	Rice	extracellular	71.81	71.18
Zm00001d033583_P001	Maize	extracellular	70.04	70.67
Os03t0693800-00	Rice	extracellular	70.93	70.31
Os03t0693700-01	Rice	extracellular, plasma membrane, vacuole	70.04	70.04
Os03t0693900-00	Rice	extracellular	66.96	66.96
GSMUA_Achr4P17250_001	Banana	extracellular	42.29	53.04
GSMUA_AchrUn_...	Banana	extracellular	34.8	49.38
TraesCS6A01G382000.1	Wheat	cytosol	25.99	48.36
TraesCS6A01G383000.1	Wheat	extracellular	45.37	47.69
TraesCS6A01G382900.1	Wheat	extracellular	44.93	47.22
TraesCS6A01G382100.1	Wheat	extracellular, plasma membrane, vacuole	43.61	45.83
TraesCS3A01G040900.1	Wheat	extracellular	45.37	45.78
TraesCS6A01G382200.1	Wheat	extracellular	43.17	45.37
TraesCS1A01G080000.1	Wheat	extracellular	44.49	45.09
TraesCS5A01G453200.1	Wheat	extracellular	44.93	44.35
TraesCS2A01G109200.1	Wheat	extracellular	42.29	43.44
TraesCS3A01G165500.1	Wheat	extracellular	41.85	43.18
TraesCS3A01G253300.1	Wheat	extracellular	40.53	41.44
TraesCS7A01G178300.1	Wheat	extracellular	35.24	37.74
TraesCS6A01G028700.1	Wheat	extracellular, unclear	37.89	37.72
TraesCS2A01G075000.1	Wheat	extracellular	34.8	37.09
TraesCS4A01G010200.1	Wheat	cytosol, extracellular	33.92	36.49

Protein Annotations

EnsemblPlants:TraesCS4A01G278900.1	EnsemblPlantsGene:TraesCS4A01G278900	Gene3D:2.60.120.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0030145
GO:GO:0045735	InterPro:Cupin_1	InterPro:Germin	InterPro:Germin_Mn-BS	InterPro:IPR014710	InterPro:RmlC-like_jellyroll
InterPro:RmlC_Cupin_sf	PANTHER:PTHR31238	PANTHER:PTHR31238:SF26	PFAM:PF00190	PRINTS:PR00325	ScanProsite:PS00725
SignalP:SignalP-noTM	SMART:SM00835	SUPFAM:SSF51182	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr4A:-:586501219..586501902

Molecular Weight (calculated)

24223.0 Da

IEP (calculated)

4.953

GRAVY (calculated)

0.079

Length

227 amino acids

Sequence
(BLAST)

001: MVYSKTIACM FTMLLLAPAI MATDPDPLQD FCVADLDDNA VRVNGYPCVP QSEAGDDFLF SSKLARGGNT STPNGSAVTR LDVTEFPGEN TQGISMNRVD
101: FAPGGTNPPH IHPRATEIGL VVKGELLVGI IGSNESGNRL YSRVVRAGEN FLIPRGLMHF QFNTGDTVAT MFVSFNSQNP GIVFVPLTLF GSDPPIPTPV
201: LTRALRVDAG VVELLKSRFA GGSFQAS

Best Arabidopsis Sequence Match ( AT1G18970.1 )
(BLAST)

001: MATLQIPSAL LRSFLLMFCL FVIPSLSSDS DPLQDFCVGD LKASASINGF PCKSAVSASD FFYSGLGGPL DTSNPNGVTV APANVLTFPG LNTLGISMNN
101: VELAPGGVNP PHLHPRATEV GTVIEGSVFV GFLSTNNTLF SKVLNAGEAF VIPRGLVHFQ WNVGQVKARM ITAFNSQLPG AVVLPSTLFG SKPEIPNAVL
201: TRAFRTDDTT VQNLKSKFAV

Arabidopsis Description

GLP1Germin-like protein subfamily T member 1 [Source:UniProtKB/Swiss-Prot;Acc:P92995]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.