Factsheet for HORVU4Hr1G005540.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G032500.1	Wheat	extracellular, unclear	90.87	92.07
TraesCS4A01G278900.1	Wheat	extracellular, unclear	89.13	90.31
TraesCS2A01G211800.1	Wheat	extracellular	87.39	88.55
HORVU4Hr1G005380.1	Barley	extracellular	81.74	83.93
HORVU4Hr1G005440.3	Barley	extracellular	82.17	80.43
EER91050	Sorghum	extracellular	71.3	72.89
Os03t0694000-01	Rice	extracellular	71.3	71.62
Zm00001d033583_P001	Maize	extracellular	69.57	71.11
Os03t0693800-00	Rice	extracellular	70.43	70.74
Os03t0693700-01	Rice	extracellular, plasma membrane, vacuole	69.57	70.48
Os03t0693900-00	Rice	extracellular	67.39	68.28
GSMUA_Achr4P17250_001	Banana	extracellular	42.61	54.14
GSMUA_AchrUn_...	Banana	extracellular	34.78	50.0
HORVU3Hr1G107930.1	Barley	extracellular	48.26	49.33
HORVU3Hr1G107860.1	Barley	extracellular	47.39	48.44
HORVU3Hr1G107830.1	Barley	extracellular	47.39	48.44
HORVU6Hr1G089570.3	Barley	extracellular, vacuole	46.52	48.42
HORVU6Hr1G089510.1	Barley	extracellular	44.35	47.22
HORVU3Hr1G107870.1	Barley	extracellular	44.35	46.15
HORVU6Hr1G089450.1	Barley	extracellular	43.04	45.83
HORVU3Hr1G107910.2	Barley	mitochondrion, vacuole	43.91	40.73
HORVU7Hr1G036720.1	Barley	extracellular	35.22	38.21
HORVU6Hr1G005420.1	Barley	extracellular	36.96	37.28
HORVU5Hr1G109190.1	Barley	extracellular, mitochondrion, vacuole	46.09	36.43
HORVU3Hr1G066330.1	Barley	extracellular, mitochondrion, vacuole	40.43	35.23
HORVU2Hr1G127670.1	Barley	extracellular, vacuole	32.61	33.78
HORVU3Hr1G034100.2	Barley	cytosol, plastid	38.7	33.71
HORVU0Hr1G023590.1	Barley	extracellular, vacuole	31.74	33.03
HORVU6Hr1G066380.1	Barley	extracellular, vacuole	31.74	32.59
HORVU2Hr1G127660.1	Barley	cytosol	30.0	32.24
HORVU1Hr1G017170.1	Barley	extracellular, plastid, vacuole	45.22	31.04
HORVU4Hr1G076480.3	Barley	vacuole	30.43	29.79

Protein Annotations

Gene3D:2.60.120.10	MapMan:35.1	UniProt:A0A287N132	InterPro:Cupin_1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005576	GO:GO:0030145	GO:GO:0045735	GO:GO:0046872	InterPro:Germin
InterPro:Germin_Mn-BS	EnsemblPlantsGene:HORVU4Hr1G005540	EnsemblPlants:HORVU4Hr1G005540.1	InterPro:IPR014710	PFAM:PF00190	PRINTS:PR00325
ScanProsite:PS00725	PANTHER:PTHR31238	PANTHER:PTHR31238:SF26	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	SMART:SM00835
SUPFAM:SSF51182	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000B4814A2	:	:

Description

No Description!

Coordinates

chrchr4H:-:12470902..12472023

Molecular Weight (calculated)

24590.5 Da

IEP (calculated)

5.004

GRAVY (calculated)

0.023

Length

230 amino acids

Sequence
(BLAST)

001: MAYSKTIACL LFTTLLLAPA IMATDPDPLQ DFCVADLDDD DNKVRVNGYP CIPMSEAGDD FLFSSKLSKG GNTSTPNGSA VTRLDVTEFP GENTQGVSMN
101: RVDFAPGGTN PPHVHPRATE IGLVMKGELL VGIIGSNESG NKLYSRVVRA GENFLIPRGL MHFQFNVGKT EAYMVVAFNS QNPGIVFVPL SLFGSNPPIP
201: TPVLTRALRV DAEVVELLKS RFAGGSLQAS

Best Arabidopsis Sequence Match ( AT1G18970.1 )
(BLAST)

001: MATLQIPSAL LRSFLLMFCL FVIPSLSSDS DPLQDFCVGD LKASASINGF PCKSAVSASD FFYSGLGGPL DTSNPNGVTV APANVLTFPG LNTLGISMNN
101: VELAPGGVNP PHLHPRATEV GTVIEGSVFV GFLSTNNTLF SKVLNAGEAF VIPRGLVHFQ WNVGQVKARM ITAFNSQLPG AVVLPSTLFG SKPEIPNAVL
201: TRAFRTDDTT VQNLKSKFAV

Arabidopsis Description

GLP1Germin-like protein subfamily T member 1 [Source:UniProtKB/Swiss-Prot;Acc:P92995]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.