Factsheet for TraesCS4D01G032500.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, unclear
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G278900.1	Wheat	extracellular, unclear	95.15	95.15
TraesCS2A01G211800.1	Wheat	extracellular	93.39	93.39
HORVU4Hr1G005540.1	Barley	extracellular	92.07	90.87
TraesCS4D01G031700.1	Wheat	extracellular	81.94	83.41
TraesCS4D01G031600.1	Wheat	extracellular, vacuole	81.06	82.14
TraesCS4D01G032200.1	Wheat	extracellular	81.06	82.14
TraesCS4D01G032000.1	Wheat	extracellular	80.62	81.7
TraesCS4D01G031800.1	Wheat	extracellular	80.18	81.25
TraesCS4D01G030700.1	Wheat	extracellular	79.74	80.8
TraesCS4D01G030800.1	Wheat	extracellular	79.3	80.36
TraesCS4D01G031900.1	Wheat	extracellular	79.3	80.36
TraesCS4D01G032100.1	Wheat	extracellular, vacuole	64.32	79.78
TraesCS4D01G030600.1	Wheat	extracellular	78.41	79.46
Os03t0694000-01	Rice	extracellular	71.81	71.18
EER91050	Sorghum	extracellular	70.48	71.11
Os03t0693700-01	Rice	extracellular, plasma membrane, vacuole	70.48	70.48
Os03t0693800-00	Rice	extracellular	70.93	70.31
Zm00001d033583_P001	Maize	extracellular	69.16	69.78
Os03t0693900-00	Rice	extracellular	66.96	66.96
GSMUA_Achr4P17250_001	Banana	extracellular	43.17	54.14
GSMUA_AchrUn_...	Banana	extracellular	35.68	50.62
TraesCS3D01G489800.1	Wheat	extracellular	48.02	48.44
TraesCS3D01G489700.1	Wheat	extracellular	47.14	47.56
TraesCS6D01G367700.1	Wheat	extracellular	44.49	46.76
TraesCS3D01G490500.1	Wheat	extracellular	46.26	46.67
TraesCS7D01G477200.1	Wheat	extracellular	46.26	46.67
TraesCS6D01G367800.1	Wheat	extracellular	44.05	46.3
TraesCS1D01G081700.1	Wheat	extracellular	45.37	45.98
TraesCS6D01G367000.1	Wheat	extracellular, plasma membrane, vacuole	43.61	45.83
TraesCS6D01G366700.1	Wheat	extracellular, plasma membrane, vacuole	42.29	45.28
TraesCS6D01G366900.1	Wheat	vacuole	41.85	44.81
TraesCS3D01G490200.1	Wheat	extracellular	44.05	43.86
TraesCS3D01G490100.1	Wheat	extracellular	44.05	43.67
TraesCS3D01G490300.1	Wheat	extracellular	34.8	43.65
TraesCS3D01G176100.1	Wheat	extracellular	42.29	43.64
TraesCS5D01G464000.1	Wheat	extracellular	44.05	43.48
TraesCS3D01G490600.1	Wheat	extracellular	43.61	43.42
TraesCS2D01G109300.1	Wheat	vacuole	41.41	42.15
TraesCS3D01G254200.1	Wheat	extracellular	40.53	41.44
TraesCS3D01G490400.1	Wheat	extracellular	39.21	41.2
TraesCS7D01G180200.1	Wheat	extracellular, vacuole	36.12	38.68
TraesCS2D01G073700.1	Wheat	extracellular	35.68	38.21
TraesCS6D01G033100.1	Wheat	golgi	38.33	38.16
TraesCS2D01G073600.1	Wheat	extracellular	33.92	37.02
TraesCS2D01G566700.1	Wheat	extracellular	33.92	36.15
TraesCS4D01G293000.1	Wheat	endoplasmic reticulum, extracellular, vacuole	33.92	33.48

Protein Annotations

EnsemblPlants:TraesCS4D01G032500.1	EnsemblPlantsGene:TraesCS4D01G032500	Gene3D:2.60.120.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0030145
GO:GO:0045735	InterPro:Cupin_1	InterPro:Germin	InterPro:Germin_Mn-BS	InterPro:IPR014710	InterPro:RmlC-like_jellyroll
InterPro:RmlC_Cupin_sf	PANTHER:PTHR31238	PANTHER:PTHR31238:SF26	PFAM:PF00190	PRINTS:PR00325	ScanProsite:PS00725
SignalP:SignalP-noTM	SMART:SM00835	SUPFAM:SSF51182	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr4D:+:14936267..14936950

Molecular Weight (calculated)

24084.9 Da

IEP (calculated)

4.956

GRAVY (calculated)

0.081

Length

227 amino acids

Sequence
(BLAST)

001: MACSKTIACL FTMLLLAPAI MAADPDPLQD FCVADLDDNA VRVNGYPCIP QSEAGDDFLF SSKLAKGGNT STPNGSAVTR LDVTEFPGEN TQGISMNRVD
101: FAPGGTNPPH IHPRATEIGL VMKGELLVGI IGSNESGNRL YSRVVRAGEN FLIPHGLMHF QFNAGDTEAT MFVSFNSQNP GIVFVPLTLF GSNPPIPTPV
201: LTRALRVDAG VVELLKSRFA GGSFQAS

Best Arabidopsis Sequence Match ( AT1G18970.1 )
(BLAST)

001: MATLQIPSAL LRSFLLMFCL FVIPSLSSDS DPLQDFCVGD LKASASINGF PCKSAVSASD FFYSGLGGPL DTSNPNGVTV APANVLTFPG LNTLGISMNN
101: VELAPGGVNP PHLHPRATEV GTVIEGSVFV GFLSTNNTLF SKVLNAGEAF VIPRGLVHFQ WNVGQVKARM ITAFNSQLPG AVVLPSTLFG SKPEIPNAVL
201: TRAFRTDDTT VQNLKSKFAV

Arabidopsis Description

GLP1Germin-like protein subfamily T member 1 [Source:UniProtKB/Swiss-Prot;Acc:P92995]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.