Factsheet for Zm00001d037513_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

plastid: 20089766
extracellular: 20408568
plastid: 22065420
extracellular: 22192489
plastid: 23198870
nucleus: 24677780

msms PMID: 24677780 doi

B Guo, Y Chen, C Li, T Wang, R Wang, B Wang, S Hu, X Du, H Xing, X Song, Y Yao, Q Sun, Z Ni

State Key Laboratory for Agrobiotechnology, Key Laboratory of Crop Heterosis and Utilization (MOE), Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, China; National Plant Gene Research Centre (Beijing), Beijing, China.

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 22192489 doi

K Witzel, M Shahzad, A Matros, HP Mock, KH Mühling

Institute of Plant Nutrition and Soil Science, Christian Albrechts University, Hermann-Rodewald-Strasse 2, 24118 Kiel, Germany. khmuehling@plantnutrition.uni-kiel.de.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES17780	Sorghum	extracellular, vacuole	94.34	90.5
Os08t0460000-01	Rice	extracellular	85.85	85.45
TraesCS7A01G178300.1	Wheat	extracellular	83.49	83.49
TraesCS7B01G084000.1	Wheat	plastid	83.02	83.02
HORVU7Hr1G036720.1	Barley	extracellular	82.55	82.55
TraesCS7D01G180200.1	Wheat	extracellular, vacuole	82.55	82.55
TraesCS2D01G073700.1	Wheat	extracellular	82.08	82.08
TraesCS2B01G090300.1	Wheat	extracellular	82.08	82.08
TraesCS2A01G075000.1	Wheat	extracellular	81.6	81.22
TraesCS2D01G073600.1	Wheat	extracellular	79.25	80.77
Solyc07g041720.1.1	Tomato	nucleus, plastid	59.91	60.19
VIT_11s0016g01220.t01	Wine grape	extracellular	58.49	59.62
PGSC0003DMT400033858	Potato	extracellular	58.96	59.24
GSMUA_Achr2P18710_001	Banana	extracellular	69.34	58.8
PGSC0003DMT400036428	Potato	extracellular	57.55	58.65
GSMUA_Achr9P16110_001	Banana	plasma membrane, plastid, vacuole	70.28	58.2
KRH02617	Soybean	nucleus	57.08	58.17
PGSC0003DMT400030317	Potato	extracellular	57.08	58.17
KRH06186	Soybean	extracellular, vacuole	57.08	57.89
Bra020113.1-P	Field mustard	extracellular, plasma membrane, vacuole	57.55	57.82
Bra006567.1-P	Field mustard	extracellular, plasma membrane, vacuole	57.55	57.82
CDY45080	Canola	extracellular, plasma membrane, vacuole	57.55	57.82
CDY51841	Canola	extracellular, plasma membrane, vacuole	57.55	57.82
VIT_18s0086g00590.t01	Wine grape	cytosol	33.49	57.72
VIT_18s0086g00410.t01	Wine grape	extracellular	56.6	57.42
AT1G72610.1	Thale cress	extracellular, vacuole	56.13	57.21
Solyc03g123410.1.1	Tomato	nucleus	56.13	57.21
CDY11164	Canola	extracellular, vacuole	55.66	57.0
CDX68260	Canola	extracellular, vacuole	55.66	57.0
KRH47600	Soybean	extracellular	56.13	56.94
AT5G20630.1	Thale cress	extracellular, plasma membrane, vacuole	56.6	56.87
CDX70935	Canola	extracellular, vacuole	56.6	56.87
KRH12528	Soybean	extracellular	57.08	56.81
VIT_09s0002g01320.t01	Wine grape	extracellular	55.66	56.46
Bra002316.1-P	Field mustard	extracellular	56.13	56.4
CDY22866	Canola	extracellular	56.13	56.4
CDY16549	Canola	extracellular	56.13	56.4
CDX92448	Canola	extracellular	56.13	56.4
CDX85429	Canola	extracellular	56.13	56.4
Bra003874.1-P	Field mustard	extracellular	54.72	56.04
VIT_09s0002g01330.t01	Wine grape	cytosol, extracellular, nucleus	25.47	54.55
CDX72929	Canola	vacuole	53.77	52.53
CDX96421	Canola	vacuole	53.3	52.07
Bra016047.1-P	Field mustard	vacuole	53.3	52.07
VIT_12s0059g00740.t01	Wine grape	cytosol	29.72	51.22
VIT_07s0005g05920.t01	Wine grape	extracellular	50.47	51.2
Bra020115.1-P	Field mustard	extracellular	50.47	50.47
CDY27880	Canola	extracellular	50.47	50.47
CDY45077	Canola	extracellular	50.47	50.47
VIT_07s0005g05910.t01	Wine grape	extracellular	49.53	50.24
VIT_07s0005g05930.t01	Wine grape	extracellular	49.53	50.24
KRH19305	Soybean	cytosol, extracellular, plastid	50.47	49.31
Zm00001d032047_P001	Maize	cytosol	43.87	48.19
CDY45079	Canola	extracellular, vacuole	49.06	47.49
Bra020114.1-P	Field mustard	extracellular, vacuole	49.06	47.49
VIT_09s0002g01340.t01	Wine grape	extracellular, vacuole	50.0	42.74
Zm00001d032048_P001	Maize	cytosol	25.94	42.64
Zm00001d018954_P002	Maize	extracellular	45.75	41.99
Zm00001d008210_P002	Maize	extracellular	38.68	38.32
Zm00001d011853_P001	Maize	extracellular	40.09	37.61
Zm00001d040519_P001	Maize	extracellular	38.21	37.16
Zm00001d042082_P001	Maize	extracellular	34.91	35.58
Zm00001d034514_P001	Maize	extracellular	38.21	35.53
Zm00001d038137_P001	Maize	extracellular	37.26	34.8
Zm00001d033583_P001	Maize	extracellular	34.91	32.89
CDX82141	Canola	vacuole	33.96	32.58
Zm00001d043710_P001	Maize	extracellular, vacuole	33.49	32.27
Zm00001d016697_P001	Maize	extracellular	33.96	30.77
Zm00001d027890_P001	Maize	extracellular, vacuole	31.13	28.7

Protein Annotations

EntrezGene:100272933	Gene3D:2.60.120.10	MapMan:35.1	ProteinID:AAQ95582.1	ProteinID:AQK84170.1	EMBL:BT033796
EMBL:BT039819	EMBL:BT040116	EMBL:BT040985	InterPro:Cupin_1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005576	GO:GO:0030145	GO:GO:0031012	GO:GO:0045735	GO:GO:0046872
InterPro:Germin	InterPro:Germin_Mn-BS	InterPro:IPR014710	PFAM:PF00190	PRINTS:PR00325	ScanProsite:PS00725
PANTHER:PTHR31238	PANTHER:PTHR31238:SF2	UniProt:Q6TM44	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	SMART:SM00835
SUPFAM:SSF51182	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI00001D8950	EnsemblPlantsGene:Zm00001d037513	EnsemblPlants:Zm00001d037513_P001
EnsemblPlants:Zm00001d037513_T001	:	:	:	:	:

Description

germin-like protein1 germin-like protein1

Coordinates

chr6:-:127667045..127667683

Molecular Weight (calculated)

21888.6 Da

IEP (calculated)

6.495

GRAVY (calculated)

0.526

Length

212 amino acids

Sequence
(BLAST)

001: MAKMVLLCVL VSFLLMPLAS LALTQDFCVA DLTCSDTPAG YPCKSSVTAN DFYFHGLAGQ GKINPLIKAA VTPAFVGQFP GVNGLGISAA RLDIEVGGVV
101: PLHTHPAGSE LLFVTQGTVA AGFISSGSNT VYTKTLYAGD IMVFPQGLLH YQYNAGTGAA VGLVAFSSPN PGLQITDFAL FANNLPSAVV EKVTFLDDAQ
201: VKKLKSVLGG SG

Best Arabidopsis Sequence Match ( AT5G20630.1 )
(BLAST)

001: MKMIIQIFFI ISLISTISFA SVQDFCVADP KGPQSPSGYS CKNPDQVTEN DFAFTGLGTA GNTSNIIKAA VTPAFAPAYA GINGLGVSLA RLDLAGGGVI
101: PLHTHPGASE VLVVIQGTIC AGFISSANKV YLKTLNRGDS MVFPQGLLHF QLNSGKGPAL AFVAFGSSSP GLQILPFALF ANDLPSELVE ATTFLSDAEV
201: KKLKGVLGGT N

Arabidopsis Description

GER3Germin-like protein subfamily 3 member 3 [Source:UniProtKB/Swiss-Prot;Acc:P94072]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.