Factsheet for VIT_18s0086g00590.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
extracellular 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0059g00740.t01	Wine grape	cytosol	76.42	76.42
VIT_09s0002g01330.t01	Wine grape	cytosol, extracellular, nucleus	55.28	68.69
VIT_18s0086g00410.t01	Wine grape	extracellular	91.87	54.07
VIT_09s0002g01320.t01	Wine grape	extracellular	89.43	52.63
VIT_07s0005g05910.t01	Wine grape	extracellular	70.73	41.63
VIT_07s0005g05930.t01	Wine grape	extracellular	70.73	41.63
VIT_07s0005g05920.t01	Wine grape	extracellular	69.92	41.15
Bra006567.1-P	Field mustard	extracellular, plasma membrane, vacuole	67.48	39.34
Bra020113.1-P	Field mustard	extracellular, plasma membrane, vacuole	67.48	39.34
CDX70935	Canola	extracellular, vacuole	67.48	39.34
CDY51841	Canola	extracellular, plasma membrane, vacuole	67.48	39.34
CDY45080	Canola	extracellular, plasma membrane, vacuole	67.48	39.34
CDY16549	Canola	extracellular	66.67	38.86
AT5G20630.1	Thale cress	extracellular, plasma membrane, vacuole	66.67	38.86
CDY22866	Canola	extracellular	66.67	38.86
CDX92448	Canola	extracellular	66.67	38.86
CDX85429	Canola	extracellular	66.67	38.86
Bra002316.1-P	Field mustard	extracellular	66.67	38.86
VIT_11s0016g01220.t01	Wine grape	extracellular	61.79	36.54
HORVU7Hr1G036720.1	Barley	extracellular	60.98	35.38
Solyc03g123410.1.1	Tomato	nucleus	59.35	35.1
PGSC0003DMT400036428	Potato	extracellular	59.35	35.1
TraesCS7A01G178300.1	Wheat	extracellular	60.16	34.91
TraesCS7B01G084000.1	Wheat	plastid	60.16	34.91
TraesCS7D01G180200.1	Wheat	extracellular, vacuole	60.16	34.91
PGSC0003DMT400030317	Potato	extracellular	58.54	34.62
TraesCS2D01G073600.1	Wheat	extracellular	57.72	34.13
TraesCS2B01G090300.1	Wheat	extracellular	58.54	33.96
TraesCS2D01G073700.1	Wheat	extracellular	58.54	33.96
Os08t0460000-01	Rice	extracellular	58.54	33.8
TraesCS2A01G075000.1	Wheat	extracellular	58.54	33.8
Zm00001d037513_P001	Maize	plastid	57.72	33.49
VIT_09s0002g01340.t01	Wine grape	extracellular, vacuole	67.48	33.47
EES17780	Sorghum	extracellular, vacuole	57.72	32.13
CDY45077	Canola	extracellular	53.66	31.13
CDY27880	Canola	extracellular	53.66	31.13
Bra020115.1-P	Field mustard	extracellular	53.66	31.13
CDY45079	Canola	extracellular, vacuole	55.28	31.05
Bra020114.1-P	Field mustard	extracellular, vacuole	55.28	31.05
GSMUA_Achr2P18710_001	Banana	extracellular	58.54	28.8
GSMUA_Achr9P16110_001	Banana	plasma membrane, plastid, vacuole	59.35	28.52
VIT_01s0026g00970.t01	Wine grape	extracellular	39.02	21.72
VIT_14s0060g00120.t01	Wine grape	extracellular	38.21	21.66
VIT_07s0005g02380.t01	Wine grape	extracellular	37.4	21.2
VIT_08s0007g03430.t01	Wine grape	cytosol	34.15	20.69
VIT_07s0005g02370.t01	Wine grape	extracellular	35.77	20.28
VIT_17s0000g05360.t01	Wine grape	endoplasmic reticulum, extracellular	35.77	19.3

Protein Annotations

Gene3D:2.60.120.10	MapMan:35.1	ProteinID:CCB60828	ProteinID:CCB60828.1	InterPro:Cupin_1	UniProt:F6I1L1
EMBL:FN596511	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618
GO:GO:0005623	GO:GO:0030145	GO:GO:0030312	GO:GO:0045735	GO:GO:0046872	InterPro:Germin
InterPro:Germin_Mn-BS	InterPro:IPR014710	PFAM:PF00190	PRINTS:PR00325	ScanProsite:PS00725	PANTHER:PTHR31238
PANTHER:PTHR31238:SF92	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	SMART:SM00835	SUPFAM:SSF51182	UniParc:UPI0002109980
ArrayExpress:VIT_18s0086g00590	EnsemblPlantsGene:VIT_18s0086g00590	EnsemblPlants:VIT_18s0086g00590.t01	:	:	:

Description

No Description!

Coordinates

chr18:+:17900189..17900703

Molecular Weight (calculated)

13245.1 Da

IEP (calculated)

6.801

GRAVY (calculated)

0.215

Length

123 amino acids

Sequence
(BLAST)

001: MARADIAPGG VIPMHTHPGA SEMILIAKGS ITAGLISSDN TVYLKTLKEG DIMVFPQGLL HFQVNTGWTQ ALLWVSFGSS SLGLQILSNA LFSNNLPSEL
101: IEKTTFLYDD EVKRLKALLG GSR

Best Arabidopsis Sequence Match ( AT1G72610.1 )
(BLAST)

001: MLRTIFLLSL LFALSNASVQ DFCVANLKRA ETPAGYPCIR PIHVKATDFV FSGLGTPGNT TNIINAAVTP AFAAQFPGLN GLGLSTARLD LAPKGVIPMH
101: THPGASEVLF VLTGSITAGF VSSANAVYVQ TLKPGQVMVF PQGLLHFQIN AGKSSASAVV TFNSANPGLQ ILDFALFANS LPTELVVGTT FLDATTVKKL
201: KGVLGGTG

Arabidopsis Description

GLP1Germin-like protein subfamily 3 member 1 [Source:UniProtKB/Swiss-Prot;Acc:P94040]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.