Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 2
- extracellular 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_18s0086g00590.t01 | Wine grape | cytosol | 76.42 | 76.42 |
| VIT_09s0002g01330.t01 | Wine grape | cytosol, extracellular, nucleus | 42.28 | 52.53 |
| VIT_18s0086g00410.t01 | Wine grape | extracellular | 78.05 | 45.93 |
| VIT_09s0002g01320.t01 | Wine grape | extracellular | 76.42 | 44.98 |
| VIT_07s0005g05930.t01 | Wine grape | extracellular | 61.79 | 36.36 |
| VIT_07s0005g05910.t01 | Wine grape | extracellular | 61.79 | 36.36 |
| VIT_07s0005g05920.t01 | Wine grape | extracellular | 60.98 | 35.89 |
| Bra020113.1-P | Field mustard | extracellular, plasma membrane, vacuole | 53.66 | 31.28 |
| CDY45080 | Canola | extracellular, plasma membrane, vacuole | 53.66 | 31.28 |
| VIT_11s0016g01220.t01 | Wine grape | extracellular | 52.85 | 31.25 |
| Solyc03g123410.1.1 | Tomato | nucleus | 52.85 | 31.25 |
| PGSC0003DMT400030317 | Potato | extracellular | 52.85 | 31.25 |
| Bra002316.1-P | Field mustard | extracellular | 52.85 | 30.81 |
| CDY51841 | Canola | extracellular, plasma membrane, vacuole | 52.85 | 30.81 |
| AT5G20630.1 | Thale cress | extracellular, plasma membrane, vacuole | 52.85 | 30.81 |
| Bra006567.1-P | Field mustard | extracellular, plasma membrane, vacuole | 52.85 | 30.81 |
| CDX70935 | Canola | extracellular, vacuole | 52.85 | 30.81 |
| CDX85429 | Canola | extracellular | 52.85 | 30.81 |
| CDX92448 | Canola | extracellular | 52.85 | 30.81 |
| CDY16549 | Canola | extracellular | 52.85 | 30.81 |
| CDY22866 | Canola | extracellular | 52.85 | 30.81 |
| PGSC0003DMT400036428 | Potato | extracellular | 51.22 | 30.29 |
| TraesCS7D01G180200.1 | Wheat | extracellular, vacuole | 51.22 | 29.72 |
| Zm00001d037513_P001 | Maize | plastid | 51.22 | 29.72 |
| TraesCS7B01G084000.1 | Wheat | plastid | 51.22 | 29.72 |
| TraesCS7A01G178300.1 | Wheat | extracellular | 51.22 | 29.72 |
| HORVU7Hr1G036720.1 | Barley | extracellular | 51.22 | 29.72 |
| Os08t0460000-01 | Rice | extracellular | 51.22 | 29.58 |
| TraesCS2D01G073600.1 | Wheat | extracellular | 49.59 | 29.33 |
| TraesCS2D01G073700.1 | Wheat | extracellular | 50.41 | 29.25 |
| TraesCS2B01G090300.1 | Wheat | extracellular | 50.41 | 29.25 |
| TraesCS2A01G075000.1 | Wheat | extracellular | 50.41 | 29.11 |
| EES17780 | Sorghum | extracellular, vacuole | 51.22 | 28.51 |
| VIT_09s0002g01340.t01 | Wine grape | extracellular, vacuole | 55.28 | 27.42 |
| Bra020114.1-P | Field mustard | extracellular, vacuole | 46.34 | 26.03 |
| CDY45079 | Canola | extracellular, vacuole | 46.34 | 26.03 |
| CDY45077 | Canola | extracellular | 44.72 | 25.94 |
| CDY27880 | Canola | extracellular | 44.72 | 25.94 |
| Bra020115.1-P | Field mustard | extracellular | 44.72 | 25.94 |
| GSMUA_Achr2P18710_001 | Banana | extracellular | 50.41 | 24.8 |
| GSMUA_Achr9P16110_001 | Banana | plasma membrane, plastid, vacuole | 51.22 | 24.61 |
| VIT_01s0026g00970.t01 | Wine grape | extracellular | 34.15 | 19.0 |
| VIT_08s0007g03430.t01 | Wine grape | cytosol | 30.08 | 18.23 |
| VIT_07s0005g02380.t01 | Wine grape | extracellular | 31.71 | 17.97 |
| VIT_14s0060g00120.t01 | Wine grape | extracellular | 30.08 | 17.05 |
| VIT_07s0005g02370.t01 | Wine grape | extracellular | 30.08 | 17.05 |
| VIT_17s0000g05360.t01 | Wine grape | endoplasmic reticulum, extracellular | 30.89 | 16.67 |
Protein Annotations
| EntrezGene:100265507 | wikigene:100265507 | Gene3D:2.60.120.10 | MapMan:35.1 | ProteinID:CCB51966 | ProteinID:CCB51966.1 |
| InterPro:Cupin_1 | UniProt:F6HIC0 | EMBL:FN595765 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005576 | GO:GO:0005618 | GO:GO:0005623 | GO:GO:0030145 | GO:GO:0030312 | GO:GO:0045735 |
| GO:GO:0046872 | InterPro:Germin | InterPro:Germin_Mn-BS | InterPro:IPR014710 | EntrezGene:LOC100265507 | wikigene:LOC100265507 |
| PFAM:PF00190 | PRINTS:PR00325 | ScanProsite:PS00725 | PANTHER:PTHR31238 | PANTHER:PTHR31238:SF92 | InterPro:RmlC-like_jellyroll |
| InterPro:RmlC_Cupin_sf | SMART:SM00835 | SUPFAM:SSF51182 | UniParc:UPI00021087CF | ArrayExpress:VIT_12s0059g00740 | EnsemblPlantsGene:VIT_12s0059g00740 |
| EnsemblPlants:VIT_12s0059g00740.t01 | RefSeq:XP_002269107 | RefSeq:XP_002269107.1 | RefSeq:XP_002269107.2 | : | : |
Description
No Description!
Coordinates
chr12:+:5553087..5553641
Molecular Weight (calculated)
13403.2 Da
IEP (calculated)
6.073
GRAVY (calculated)
0.220
Length
123 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQANIAPSG VVPTHTHPGS LEIILIAKGS VTVGLISSNN TVYLKTLKDE VIMVFPRGLL HFHVNTDRTQ TLFWVIFCSS NLDLQILNNA LFGNNLPSEL
101: IENTTFLDDD EVKRLKALLG GSG
101: IENTTFLDDD EVKRLKALLG GSG
001: MLRTIFLLSL LFALSNASVQ DFCVANLKRA ETPAGYPCIR PIHVKATDFV FSGLGTPGNT TNIINAAVTP AFAAQFPGLN GLGLSTARLD LAPKGVIPMH
101: THPGASEVLF VLTGSITAGF VSSANAVYVQ TLKPGQVMVF PQGLLHFQIN AGKSSASAVV TFNSANPGLQ ILDFALFANS LPTELVVGTT FLDATTVKKL
201: KGVLGGTG
101: THPGASEVLF VLTGSITAGF VSSANAVYVQ TLKPGQVMVF PQGLLHFQIN AGKSSASAVV TFNSANPGLQ ILDFALFANS LPTELVVGTT FLDATTVKKL
201: KGVLGGTG
Arabidopsis Description
GLP1Germin-like protein subfamily 3 member 1 [Source:UniProtKB/Swiss-Prot;Acc:P94040]
SUBAcon: [extracellular,vacuole]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.