Factsheet for PGSC0003DMT400030317

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

extracellular: 28248230

msms PMID: 28248230 doi

E Elagamey, K Narula, A Sinha, PR Aggarwal, S Ghosh, N Chakraborty, S Chakraborty

National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. aggarwal.pooja28@yahoo.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. arunima35@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. gayatrinarula@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. nchakraborty@nipgr.ac.in., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. schakraborty@nipgr.ac.in., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. sgblackpearl@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. subhrac@hotmail.com.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036428	Potato	extracellular	83.65	83.65
PGSC0003DMT400033858	Potato	extracellular	66.83	65.88
CDY51841	Canola	extracellular, plasma membrane, vacuole	66.35	65.4
Bra006567.1-P	Field mustard	extracellular, plasma membrane, vacuole	65.87	64.93
CDX70935	Canola	extracellular, vacuole	65.38	64.45
Bra020113.1-P	Field mustard	extracellular, plasma membrane, vacuole	64.9	63.98
AT5G20630.1	Thale cress	extracellular, plasma membrane, vacuole	64.9	63.98
CDY45080	Canola	extracellular, plasma membrane, vacuole	64.9	63.98
Bra002316.1-P	Field mustard	extracellular	64.42	63.51
CDY22866	Canola	extracellular	64.42	63.51
CDY16549	Canola	extracellular	64.42	63.51
CDX92448	Canola	extracellular	64.42	63.51
CDX85429	Canola	extracellular	64.42	63.51
VIT_09s0002g01320.t01	Wine grape	extracellular	60.58	60.29
TraesCS2B01G090300.1	Wheat	extracellular	60.58	59.43
TraesCS7A01G178300.1	Wheat	extracellular	60.58	59.43
TraesCS7D01G180200.1	Wheat	extracellular, vacuole	60.1	58.96
HORVU7Hr1G036720.1	Barley	extracellular	60.1	58.96
TraesCS2D01G073700.1	Wheat	extracellular	60.1	58.96
TraesCS7B01G084000.1	Wheat	plastid	60.1	58.96
Os08t0460000-01	Rice	extracellular	60.1	58.69
TraesCS2A01G075000.1	Wheat	extracellular	60.1	58.69
TraesCS2D01G073600.1	Wheat	extracellular	58.65	58.65
VIT_18s0086g00590.t01	Wine grape	cytosol	34.62	58.54
VIT_18s0086g00410.t01	Wine grape	extracellular	58.17	57.89
Zm00001d037513_P001	Maize	plastid	58.17	57.08
EES17780	Sorghum	extracellular, vacuole	58.65	55.2
Bra020115.1-P	Field mustard	extracellular	56.25	55.19
CDY27880	Canola	extracellular	56.25	55.19
CDY45077	Canola	extracellular	56.25	55.19
GSMUA_Achr9P16110_001	Banana	plasma membrane, plastid, vacuole	67.79	55.08
Bra020114.1-P	Field mustard	extracellular, vacuole	57.69	54.79
CDY45079	Canola	extracellular, vacuole	57.69	54.79
VIT_09s0002g01330.t01	Wine grape	cytosol, extracellular, nucleus	25.96	54.55
VIT_07s0005g05920.t01	Wine grape	extracellular	53.85	53.59
VIT_12s0059g00740.t01	Wine grape	cytosol	31.25	52.85
VIT_07s0005g05910.t01	Wine grape	extracellular	52.88	52.63
VIT_07s0005g05930.t01	Wine grape	extracellular	52.88	52.63
GSMUA_Achr2P18710_001	Banana	extracellular	62.02	51.6
VIT_09s0002g01340.t01	Wine grape	extracellular, vacuole	52.88	44.35
PGSC0003DMT400047065	Potato	cytosol, extracellular	35.58	35.24
PGSC0003DMT400047067	Potato	cytosol	35.1	34.6
PGSC0003DMT400061586	Potato	extracellular	35.1	34.43
PGSC0003DMT400063166	Potato	vacuole	34.13	32.72
PGSC0003DMT400063164	Potato	vacuole	33.65	31.82
PGSC0003DMT400058298	Potato	extracellular, vacuole	30.77	30.33

Protein Annotations

EntrezGene:102587114	Gene3D:2.60.120.10	MapMan:35.1	InterPro:Cupin_1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005576	GO:GO:0030145	GO:GO:0045735	GO:GO:0046872	InterPro:Germin
InterPro:Germin_Mn-BS	InterPro:IPR014710	UniProt:M1AU24	PFAM:PF00190	EnsemblPlantsGene:PGSC0003DMG400011603	PGSC:PGSC0003DMG400011603
EnsemblPlants:PGSC0003DMT400030317	PRINTS:PR00325	ScanProsite:PS00725	PANTHER:PTHR31238	PANTHER:PTHR31238:SF92	InterPro:RmlC-like_jellyroll
InterPro:RmlC_Cupin_sf	SMART:SM00835	SUPFAM:SSF51182	SignalP:SignalP-noTM	UniParc:UPI0002952B33	RefSeq:XP_006361339.1

Description

Germin [Source:PGSC_GENE;Acc:PGSC0003DMG400011603]

Coordinates

chr12:+:52609991..52610831

Molecular Weight (calculated)

21645.1 Da

IEP (calculated)

7.507

GRAVY (calculated)

0.512

Length

208 amino acids

Sequence
(BLAST)

001: MFKLLFVFAV LILSSNASVQ DFCVADLKGP ESPAGYSCKS VTKVTVNDFV FSGLSAAGDT SNIIKASVSP AFAAQFPGLN GLGLSAARLD LAPGGVVPFH
101: THPGASEVLL VVQGSITAAF VSSANTVYLK TIKKGELMVF PQGLLHFQVN AVGFNSVAYV FFSSSNPGLQ ITDFALFAND LSTKLVEATT FLDEAQIKKL
201: KGVLGGTG

Best Arabidopsis Sequence Match ( AT1G72610.1 )
(BLAST)

001: MLRTIFLLSL LFALSNASVQ DFCVANLKRA ETPAGYPCIR PIHVKATDFV FSGLGTPGNT TNIINAAVTP AFAAQFPGLN GLGLSTARLD LAPKGVIPMH
101: THPGASEVLF VLTGSITAGF VSSANAVYVQ TLKPGQVMVF PQGLLHFQIN AGKSSASAVV TFNSANPGLQ ILDFALFANS LPTELVVGTT FLDATTVKKL
201: KGVLGGTG

Arabidopsis Description

GLP1Germin-like protein subfamily 3 member 1 [Source:UniProtKB/Swiss-Prot;Acc:P94040]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.